Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31875 * 119.63587 * 2 1 4 4 C 1.31844 * 121.74963 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.58906 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.46784 * 65.02066 * 5 4 3 7 7 N 1.46900 * 109.47228 * 185.02291 * 5 4 3 8 8 C 1.50699 * 109.46872 * 305.02161 * 5 4 3 9 9 H 1.08001 * 120.00484 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99499 * 179.97438 * 8 5 4 11 11 N 1.31511 * 120.00154 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 119.99640 * 180.02562 * 10 8 5 13 13 H 1.48499 * 109.47252 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46895 * 120.00407 * 12 10 8 15 15 H 1.48500 * 109.47237 * 240.00398 * 12 10 8 16 16 C 1.38238 * 120.82205 * 359.97438 * 4 3 2 17 17 C 1.38591 * 119.18924 * 0.25778 * 16 4 3 18 18 C 1.38421 * 119.64066 * 179.97438 * 2 1 3 19 19 F 1.35106 * 120.44122 * 0.02562 * 18 2 1 20 20 H 1.09001 * 109.47122 * 89.99831 * 1 2 3 21 21 H 1.08998 * 109.46740 * 209.99984 * 1 2 3 22 22 H 1.08998 * 109.47118 * 329.99484 * 1 2 3 23 23 H 1.00903 * 110.99494 * 296.04727 * 7 5 4 24 24 H 1.00903 * 111.00122 * 59.99817 * 7 5 4 25 25 H 0.97002 * 119.99919 * 179.97438 * 11 10 8 26 26 H 1.08002 * 120.40263 * 179.97438 * 16 4 3 27 27 H 1.07999 * 120.80092 * 179.72215 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1591 1.1462 0.0000 4 6 3.4767 1.1949 -0.0005 5 6 4.1720 2.5319 -0.0011 6 1 3.9549 3.0547 0.9305 7 7 5.6219 2.3298 -0.1228 8 6 3.6798 3.3535 -1.1646 9 1 2.9375 2.9482 -1.8363 10 6 4.1766 4.6230 -1.3711 11 7 5.0801 5.1168 -0.5529 12 14 3.5660 5.6417 -2.8130 13 1 2.5573 4.8641 -3.5765 14 1 2.9469 6.8934 -2.3078 15 1 4.7082 5.9777 -3.7006 16 6 4.2283 0.0347 -0.0005 17 6 3.5803 -1.1904 -0.0054 18 6 2.1916 -1.2031 0.0005 19 9 1.5177 -2.3741 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 5.9867 1.8367 0.6784 24 1 5.8490 1.8467 -0.9790 25 1 5.4298 6.0098 -0.6984 26 1 5.3072 0.0824 -0.0013 27 1 4.1418 -2.1130 -0.0101 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104668434.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = -30.826826 kcal Electronic energy + Delta-G solvation = -13455.841087 eV Core-core repulsion = 10934.209489 eV Total energy + Delta-G solvation = -2521.631598 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.94303 -41.19223 -36.69178 -34.22489 -33.41039 -32.09430 -28.30526 -28.16299 -25.16968 -23.60060 -21.91642 -18.68604 -18.58005 -18.09000 -16.97112 -16.88588 -16.34901 -15.92214 -15.11495 -14.82164 -14.76367 -14.25540 -14.11096 -13.66786 -13.25851 -13.15564 -12.96498 -12.72221 -12.51852 -11.85491 -11.29755 -10.79141 -10.56989 -10.41724 -9.56471 -9.02630 -7.98266 -6.16886 -0.02050 0.19554 1.42674 1.44921 1.55634 2.46006 2.69927 3.04924 3.24424 3.40067 3.69634 3.81108 3.98809 4.39769 4.49970 4.60316 4.67742 4.71723 4.89641 5.03701 5.12716 5.36291 5.73536 5.77757 6.14708 6.57362 7.01627 7.16515 7.22638 7.53601 9.05908 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.042362 B = 0.009108 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.817726 B = 3073.524942 C = 3516.368011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.087 3.913 3 N -0.480 5.480 4 C 0.107 3.893 5 C 0.271 3.729 6 H 0.022 0.978 7 N -0.813 5.813 8 C -0.529 4.529 9 H 0.041 0.959 10 C 0.036 3.964 11 N -0.879 5.879 12 Si 0.949 3.051 13 H -0.276 1.276 14 H -0.281 1.281 15 H -0.278 1.278 16 C -0.169 4.169 17 C -0.092 4.092 18 C 0.013 3.987 19 F -0.131 7.131 20 H 0.088 0.912 21 H 0.094 0.906 22 H 0.078 0.922 23 H 0.320 0.680 24 H 0.329 0.671 25 H 0.256 0.744 26 H 0.160 0.840 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 -12.444 0.897 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.054 4.054 3 N -0.190 5.190 4 C -0.033 4.033 5 C 0.160 3.840 6 H 0.039 0.961 7 N -0.342 5.342 8 C -0.568 4.568 9 H 0.059 0.941 10 C -0.168 4.168 11 N -0.515 5.515 12 Si 0.775 3.225 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.204 1.204 16 C -0.189 4.189 17 C -0.118 4.118 18 C -0.008 4.008 19 F -0.110 7.110 20 H 0.106 0.894 21 H 0.113 0.887 22 H 0.097 0.903 23 H 0.133 0.867 24 H 0.143 0.857 25 H 0.065 0.935 26 H 0.177 0.823 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.974 -10.741 0.956 11.493 hybrid contribution -0.086 -1.154 -0.633 1.319 sum -4.060 -11.895 0.323 12.573 Atomic orbital electron populations 1.20742 0.86519 1.04364 1.04091 1.22063 0.99292 0.87136 0.96875 1.67509 1.10957 1.27973 1.12517 1.23324 0.89723 0.98922 0.91325 1.17726 0.84009 0.85692 0.96610 0.96077 1.58934 1.13216 1.56822 1.05213 1.20954 1.23480 0.99948 1.12441 0.94088 1.25609 0.94595 0.98332 0.98223 1.70206 1.28074 1.15984 1.37266 0.85684 0.78095 0.78698 0.80054 1.20113 1.20653 1.20377 1.22061 1.02785 0.91319 1.02740 1.21877 0.92149 1.00413 0.97368 1.18561 0.91458 0.81958 1.08859 1.91462 1.80174 1.44995 1.94320 0.89396 0.88739 0.90268 0.86730 0.85720 0.93459 0.82287 0.80393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.73 10.00 71.24 0.71 -2.01 15 2 C 0.09 3.04 6.79 42.60 0.29 3.33 15 3 N -0.48 -20.75 9.87 -171.90 -1.70 -22.44 15 4 C 0.11 4.57 6.11 42.56 0.26 4.83 15 5 C 0.27 13.54 3.10 43.42 0.13 13.68 15 6 H 0.02 1.23 8.14 -2.38 -0.02 1.21 15 7 N -0.81 -35.93 7.83 -174.94 -1.37 -37.30 15 8 C -0.53 -29.69 8.53 25.60 0.22 -29.47 15 9 H 0.04 2.38 7.68 -2.91 -0.02 2.35 15 10 C 0.04 2.01 5.39 84.66 0.46 2.47 15 11 N -0.88 -51.23 12.77 21.45 0.27 -50.96 15 12 Si 0.95 44.57 29.54 68.60 2.03 46.59 15 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 14 H -0.28 -12.93 7.11 99.48 0.71 -12.22 15 15 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 16 C -0.17 -5.60 9.06 22.35 0.20 -5.39 15 17 C -0.09 -2.59 10.16 22.51 0.23 -2.36 15 18 C 0.01 0.41 7.27 22.47 0.16 0.57 15 19 F -0.13 -3.61 16.49 44.97 0.74 -2.87 15 20 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 21 H 0.09 2.09 7.63 -2.39 -0.02 2.07 15 22 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.32 11.93 8.09 -89.69 -0.73 11.20 15 24 H 0.33 13.60 8.26 -89.69 -0.74 12.86 15 25 H 0.26 14.22 8.31 -92.71 -0.77 13.45 15 26 H 0.16 4.44 6.19 -2.91 -0.02 4.43 15 27 H 0.18 3.51 8.06 -2.91 -0.02 3.48 15 Total: -1.00 -64.73 242.88 2.38 -62.35 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.26 Total: 19.00 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 2.67 Total: -14.37 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -2.79 Total: -110.70 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.74 Total: -2.87 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -64.73 2.38 -62.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104668434.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.520 kcal (2) G-P(sol) polarization free energy of solvation -64.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds