Wall clock time and date at job start Mon Mar 30 2020 02:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38423 * 122.53916 * 2 1 4 4 C 1.33389 * 114.92327 * 179.97438 * 3 2 1 5 5 S 1.75883 * 109.59129 * 0.02562 * 4 3 2 6 6 C 1.33389 * 122.53900 * 179.70851 * 2 1 3 7 7 C 1.50697 * 125.20130 * 0.02785 * 6 2 1 8 8 H 1.08998 * 109.47498 * 359.97438 * 7 6 2 9 9 C 1.52997 * 109.47070 * 120.00187 * 7 6 2 10 10 C 1.53002 * 109.46881 * 239.99474 * 7 6 2 11 11 C 1.50703 * 109.47082 * 175.00022 * 10 7 6 12 12 H 1.08006 * 119.99931 * 0.02562 * 11 10 7 13 13 C 1.37879 * 120.00040 * 180.02562 * 11 10 7 14 14 N 1.31512 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99854 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47372 * 89.99875 * 15 13 11 17 17 H 1.48504 * 109.46958 * 209.99729 * 15 13 11 18 18 H 1.48503 * 109.46986 * 329.99569 * 15 13 11 19 19 H 1.09002 * 109.47152 * 90.02359 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.02460 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.02440 * 1 2 3 22 22 H 1.08004 * 122.53880 * 0.02562 * 3 2 1 23 23 H 1.07994 * 125.20325 * 179.97438 * 4 3 2 24 24 H 1.09002 * 109.46853 * 299.99720 * 9 7 6 25 25 H 1.08998 * 109.47368 * 59.99421 * 9 7 6 26 26 H 1.09006 * 109.47403 * 179.97438 * 9 7 6 27 27 H 1.08994 * 109.47537 * 295.00171 * 10 7 6 28 28 H 1.09005 * 109.46871 * 55.00345 * 10 7 6 29 29 H 0.96993 * 120.00161 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9902 0.0005 5 16 3.9386 -0.7304 0.0004 6 6 2.2245 -1.1245 0.0057 7 6 1.6536 -2.5191 0.0122 8 1 0.5649 -2.4662 0.0120 9 6 2.1285 -3.2704 -1.2332 10 6 2.1276 -3.2583 1.2652 11 6 1.4602 -4.6077 1.3350 12 1 0.7677 -4.9082 0.5626 13 6 1.7338 -5.4587 2.3848 14 7 2.5775 -5.0930 3.3250 15 14 0.9071 -7.1316 2.4708 16 1 1.7444 -8.1344 1.7649 17 1 0.7475 -7.5323 3.8919 18 1 -0.4278 -7.0579 1.8244 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 0.8902 0.5135 21 1 -0.3633 -0.8898 0.5142 22 1 1.7965 2.1464 0.0004 23 1 4.3077 1.7823 0.0002 24 1 1.7909 -2.7437 -2.1258 25 1 3.2172 -3.3233 -1.2325 26 1 1.7160 -4.2793 -1.2283 27 1 3.2088 -3.3895 1.2226 28 1 1.8666 -2.6777 2.1501 29 1 2.7702 -5.6917 4.0633 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107541762.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:13 Heat of formation + Delta-G solvation = 5.398283 kcal Electronic energy + Delta-G solvation = -11660.505987 eV Core-core repulsion = 9674.365653 eV Total energy + Delta-G solvation = -1986.140335 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.15623 -34.85072 -32.21113 -30.08202 -27.19986 -26.46984 -23.64508 -22.39147 -19.93284 -18.02729 -16.44921 -16.04381 -14.86316 -14.51647 -13.71741 -13.47040 -12.89646 -12.56664 -12.35234 -11.77444 -11.63734 -11.57630 -11.40731 -10.98925 -10.88916 -10.62847 -10.41634 -10.28621 -9.75393 -9.44275 -9.06315 -8.35682 -7.98295 -7.81372 -5.99568 -4.02252 1.53114 2.17043 2.56829 3.14939 3.31902 3.38436 3.41221 4.45611 5.29224 5.35915 5.40316 5.71189 5.80831 5.93059 5.97306 6.00383 6.17427 6.28346 6.40829 6.47919 6.77450 6.89204 6.91706 7.03104 7.14830 7.66215 7.78003 7.98984 8.39540 9.03465 9.61367 11.11649 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.045681 B = 0.008377 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.793079 B = 3341.515495 C = 3518.421714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.142 4.142 3 C -0.123 4.123 4 C -0.243 4.243 5 S 0.096 5.904 6 C -0.128 4.128 7 C -0.028 4.028 8 H 0.079 0.921 9 C -0.130 4.130 10 C 0.033 3.967 11 C -0.518 4.518 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 H 0.060 0.940 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.130 0.870 23 H 0.155 0.845 24 H 0.035 0.965 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.019 0.981 28 H 0.018 0.982 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 9.527 -7.087 11.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.153 4.153 3 C -0.155 4.155 4 C -0.378 4.378 5 S 0.361 5.639 6 C -0.246 4.246 7 C -0.048 4.048 8 H 0.097 0.903 9 C -0.188 4.188 10 C -0.005 4.005 11 C -0.556 4.556 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 H 0.079 0.921 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.147 0.853 23 H 0.173 0.827 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.872 8.638 -6.923 11.104 hybrid contribution -1.536 0.027 0.259 1.558 sum -0.664 8.665 -6.664 10.952 Atomic orbital electron populations 1.20453 0.90293 1.02514 1.01500 1.18776 0.97246 0.91627 1.07628 1.19937 0.92920 0.98761 1.03847 1.25448 0.99554 0.99568 1.13243 1.84288 1.07429 0.99214 1.72933 1.24868 0.94885 1.00039 1.04774 1.20083 0.99449 0.86645 0.98673 0.90288 1.21759 1.00709 1.00771 0.95552 1.19188 0.96661 0.94273 0.90362 1.21201 1.25863 1.00559 1.08009 0.92415 1.25008 0.95269 0.98372 0.95686 1.69970 1.34770 1.36612 1.11927 0.86617 0.79907 0.84438 0.77189 1.20686 1.21260 1.19846 0.92087 0.92312 0.91028 0.85256 0.82740 0.94576 0.93425 0.91185 0.96251 0.96395 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 9.71 36.01 0.35 -0.94 15 2 C -0.14 -2.42 5.80 -106.25 -0.62 -3.04 15 3 C -0.12 -1.88 9.98 -41.21 -0.41 -2.29 15 4 C -0.24 -3.66 11.23 29.04 0.33 -3.33 15 5 S 0.10 1.69 23.02 -107.50 -2.48 -0.78 15 6 C -0.13 -2.45 5.09 -36.00 -0.18 -2.63 15 7 C -0.03 -0.59 2.56 -91.77 -0.24 -0.83 15 8 H 0.08 1.62 6.26 -51.93 -0.32 1.30 15 9 C -0.13 -2.50 8.92 37.16 0.33 -2.17 15 10 C 0.03 0.84 4.36 -27.88 -0.12 0.72 15 11 C -0.52 -14.36 8.41 -34.44 -0.29 -14.65 15 12 H 0.06 1.54 7.06 -52.48 -0.37 1.17 15 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 14 N -0.89 -26.89 13.29 55.43 0.74 -26.15 15 15 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 15 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 19 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.06 0.74 8.13 -51.93 -0.42 0.32 15 21 H 0.07 1.13 6.64 -51.93 -0.34 0.78 15 22 H 0.13 1.61 8.06 -52.48 -0.42 1.19 15 23 H 0.15 1.87 8.06 -52.49 -0.42 1.45 15 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 25 H 0.05 0.91 8.00 -51.93 -0.42 0.49 15 26 H 0.07 1.39 6.95 -51.93 -0.36 1.03 15 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 LS Contribution 258.71 15.07 3.90 3.90 Total: -1.00 -29.75 258.71 -7.72 -37.47 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -3.91 Total: -3.30 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: -0.95 Total: -27.62 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.48 Total: -0.78 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.75 -7.72 -37.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107541762.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.866 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds