Wall clock time and date at job start Mon Mar 30 2020 02:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38423 * 122.53916 * 2 1 4 4 C 1.33389 * 114.92327 * 179.97438 * 3 2 1 5 5 S 1.75883 * 109.59129 * 0.02562 * 4 3 2 6 6 C 1.33389 * 122.53900 * 179.70851 * 2 1 3 7 7 C 1.50697 * 125.20130 * 0.02785 * 6 2 1 8 8 H 1.08998 * 109.47498 * 359.97438 * 7 6 2 9 9 C 1.52997 * 109.47070 * 120.00187 * 7 6 2 10 10 C 1.53002 * 109.46881 * 239.99474 * 7 6 2 11 11 C 1.50703 * 109.47082 * 175.00022 * 10 7 6 12 12 H 1.08006 * 119.99931 * 0.02562 * 11 10 7 13 13 C 1.37879 * 120.00040 * 180.02562 * 11 10 7 14 14 N 1.31512 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99854 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47372 * 89.99875 * 15 13 11 17 17 H 1.48504 * 109.46958 * 209.99729 * 15 13 11 18 18 H 1.48503 * 109.46986 * 329.99569 * 15 13 11 19 19 H 1.09002 * 109.47152 * 90.02359 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.02460 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.02440 * 1 2 3 22 22 H 1.08004 * 122.53880 * 0.02562 * 3 2 1 23 23 H 1.07994 * 125.20325 * 179.97438 * 4 3 2 24 24 H 1.09002 * 109.46853 * 299.99720 * 9 7 6 25 25 H 1.08998 * 109.47368 * 59.99421 * 9 7 6 26 26 H 1.09006 * 109.47403 * 179.97438 * 9 7 6 27 27 H 1.08994 * 109.47537 * 295.00171 * 10 7 6 28 28 H 1.09005 * 109.46871 * 55.00345 * 10 7 6 29 29 H 0.96993 * 120.00161 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9902 0.0005 5 16 3.9386 -0.7304 0.0004 6 6 2.2245 -1.1245 0.0057 7 6 1.6536 -2.5191 0.0122 8 1 0.5649 -2.4662 0.0120 9 6 2.1285 -3.2704 -1.2332 10 6 2.1276 -3.2583 1.2652 11 6 1.4602 -4.6077 1.3350 12 1 0.7677 -4.9082 0.5626 13 6 1.7338 -5.4587 2.3848 14 7 2.5775 -5.0930 3.3250 15 14 0.9071 -7.1316 2.4708 16 1 1.7444 -8.1344 1.7649 17 1 0.7475 -7.5323 3.8919 18 1 -0.4278 -7.0579 1.8244 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 0.8902 0.5135 21 1 -0.3633 -0.8898 0.5142 22 1 1.7965 2.1464 0.0004 23 1 4.3077 1.7823 0.0002 24 1 1.7909 -2.7437 -2.1258 25 1 3.2172 -3.3233 -1.2325 26 1 1.7160 -4.2793 -1.2283 27 1 3.2088 -3.3895 1.2226 28 1 1.8666 -2.6777 2.1501 29 1 2.7702 -5.6917 4.0633 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107541762.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:13 Heat of formation + Delta-G solvation = -10.699825 kcal Electronic energy + Delta-G solvation = -11661.204054 eV Core-core repulsion = 9674.365653 eV Total energy + Delta-G solvation = -1986.838401 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.49935 -36.58795 -34.23875 -31.36649 -29.11354 -27.88536 -25.49791 -23.79657 -21.58897 -19.44966 -18.31821 -17.63777 -16.52045 -16.17945 -15.15766 -14.93148 -14.56767 -14.15770 -13.85512 -13.54098 -13.06676 -12.96094 -12.79942 -12.67298 -12.62357 -12.29717 -12.18848 -11.84304 -11.47174 -11.23324 -11.07964 -10.55132 -9.34944 -9.16038 -8.17950 -6.28899 0.22465 0.85602 1.27613 1.40886 1.42059 1.52995 1.89565 2.41954 3.15415 3.98370 4.16008 4.27767 4.52032 4.60047 4.61860 4.72628 4.84081 4.91662 5.06651 5.16782 5.21657 5.29161 5.35538 5.49715 5.61272 5.73112 5.81239 5.84049 6.24129 6.86646 7.39962 8.94108 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.045681 B = 0.008377 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.793079 B = 3341.515495 C = 3518.421714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.132 4.132 3 C -0.131 4.131 4 C -0.220 4.220 5 S 0.052 5.948 6 C -0.170 4.170 7 C -0.018 4.018 8 H 0.080 0.920 9 C -0.123 4.123 10 C 0.044 3.956 11 C -0.532 4.532 12 H 0.067 0.933 13 C -0.001 4.001 14 N -0.936 5.936 15 Si 0.963 3.037 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.260 1.260 19 H 0.080 0.920 20 H 0.082 0.918 21 H 0.053 0.947 22 H 0.166 0.834 23 H 0.189 0.811 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.059 0.941 27 H -0.010 1.010 28 H -0.019 1.019 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 10.606 -8.156 13.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C -0.161 4.161 4 C -0.355 4.355 5 S 0.317 5.683 6 C -0.287 4.287 7 C -0.038 4.038 8 H 0.099 0.901 9 C -0.181 4.181 10 C 0.007 3.993 11 C -0.570 4.570 12 H 0.085 0.915 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.788 3.212 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.184 1.184 19 H 0.099 0.901 20 H 0.101 0.899 21 H 0.072 0.928 22 H 0.184 0.816 23 H 0.207 0.793 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.008 0.992 28 H -0.001 1.001 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.229 9.720 -8.010 12.598 hybrid contribution -1.178 -0.185 0.596 1.333 sum -1.407 9.535 -7.414 12.160 Atomic orbital electron populations 1.20536 0.88679 1.02813 1.02854 1.19253 0.98623 0.91635 1.04884 1.20286 0.92822 0.99591 1.03443 1.25854 1.00440 0.98126 1.11116 1.84402 1.07591 1.02413 1.73940 1.24664 0.95584 0.99608 1.08876 1.19792 0.99461 0.87838 0.96737 0.90142 1.21676 1.00162 1.00275 0.95985 1.18971 0.94729 0.94023 0.91603 1.21632 1.25822 1.01403 1.08165 0.91501 1.25971 0.95869 1.02701 0.95261 1.70119 1.36463 1.38290 1.12742 0.85470 0.79295 0.79171 0.77271 1.19867 1.21045 1.18407 0.90095 0.89901 0.92826 0.81619 0.79337 0.91791 0.94180 0.92237 0.99171 1.00055 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.41 9.71 71.24 0.69 -1.72 15 2 C -0.13 -4.27 5.80 -20.92 -0.12 -4.39 15 3 C -0.13 -3.56 9.98 21.22 0.21 -3.34 15 4 C -0.22 -6.04 11.23 66.72 0.75 -5.29 15 5 S 0.05 1.83 23.02 -56.49 -1.30 0.53 15 6 C -0.17 -6.49 5.09 24.59 0.13 -6.36 15 7 C -0.02 -0.78 2.56 -11.54 -0.03 -0.81 15 8 H 0.08 3.33 6.26 -2.39 -0.01 3.32 15 9 C -0.12 -4.75 8.92 71.98 0.64 -4.10 15 10 C 0.04 2.38 4.36 29.85 0.13 2.51 15 11 C -0.53 -30.15 8.41 25.60 0.22 -29.93 15 12 H 0.07 3.58 7.06 -2.91 -0.02 3.56 15 13 C 0.00 -0.03 5.46 84.66 0.46 0.43 15 14 N -0.94 -57.95 13.29 21.45 0.28 -57.67 15 15 Si 0.96 44.40 29.54 68.60 2.03 46.43 15 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 15 18 H -0.26 -11.32 7.11 99.48 0.71 -10.62 15 19 H 0.08 1.86 8.14 -2.39 -0.02 1.84 15 20 H 0.08 1.81 8.13 -2.39 -0.02 1.79 15 21 H 0.05 1.63 6.64 -2.38 -0.02 1.62 15 22 H 0.17 3.30 8.06 -2.91 -0.02 3.28 15 23 H 0.19 3.80 8.06 -2.91 -0.02 3.78 15 24 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 25 H 0.04 1.56 8.00 -2.39 -0.02 1.54 15 26 H 0.06 2.36 6.95 -2.38 -0.02 2.34 15 27 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 15 28 H -0.02 -1.14 8.14 -2.38 -0.02 -1.16 15 29 H 0.26 15.27 8.31 -92.71 -0.77 14.50 15 Total: -1.00 -65.42 258.71 5.21 -60.21 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.12 Total: 3.51 kcal Atomic # 6 Polarization: -56.08 SS G_CDS: 3.08 Total: -53.01 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.28 Total: -57.67 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.30 Total: 0.53 kcal Total: -65.42 5.21 -60.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107541762.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.515 kcal (2) G-P(sol) polarization free energy of solvation -65.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds