Wall clock time and date at job start Mon Mar 30 2020 02:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21293 * 119.99482 * 2 1 4 4 N 1.34777 * 120.00290 * 180.02562 * 2 1 3 5 5 C 1.40230 * 119.99830 * 180.27616 * 4 2 1 6 6 C 1.39884 * 126.70824 * 359.72107 * 5 4 2 7 7 N 1.30915 * 108.24954 * 179.97438 * 6 5 4 8 8 N 1.28696 * 109.71527 * 0.02562 * 7 6 5 9 9 C 1.46503 * 125.67634 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.46882 * 89.97512 * 9 8 7 11 11 H 1.08004 * 120.00307 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00067 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00017 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00326 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46993 * 90.00148 * 14 12 10 16 16 H 1.48498 * 109.47439 * 210.00320 * 14 12 10 17 17 H 1.48496 * 109.46937 * 330.00452 * 14 12 10 18 18 N 1.31843 * 126.70610 * 179.40882 * 5 4 2 19 19 H 1.09007 * 109.46440 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47314 * 299.99416 * 1 2 3 21 21 H 1.09002 * 109.47150 * 60.00041 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 4 2 1 23 23 H 1.07998 * 125.87581 * 359.96227 * 6 5 4 24 24 H 1.09002 * 109.46851 * 209.97210 * 9 8 7 25 25 H 1.08994 * 109.47091 * 329.97239 * 9 8 7 26 26 H 0.96992 * 120.00585 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5833 -1.1671 0.0053 6 6 4.4193 -0.0456 0.0066 7 7 5.6611 -0.4600 0.0131 8 7 5.6894 -1.7466 0.0157 9 6 6.8980 -2.5746 0.0234 10 6 7.3054 -2.8554 1.4468 11 1 6.7222 -2.4573 2.2640 12 6 8.4222 -3.6214 1.7060 13 7 9.1321 -4.1067 0.7109 14 14 8.9276 -3.9689 3.4704 15 1 8.2697 -5.2156 3.9374 16 1 10.4021 -4.1312 3.5401 17 1 8.5129 -2.8360 4.3363 18 7 4.3713 -2.2240 0.0165 19 1 -0.3632 -1.0278 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.6960 -2.0072 -0.0005 23 1 4.0960 0.9849 0.0026 24 1 6.6972 -3.5153 -0.4893 25 1 7.7032 -2.0470 -0.4877 26 1 9.9179 -4.6453 0.8931 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108292174.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:34 Heat of formation + Delta-G solvation = 68.064647 kcal Electronic energy + Delta-G solvation = -13166.570540 eV Core-core repulsion = 10669.147159 eV Total energy + Delta-G solvation = -2497.423380 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.57284 -39.56082 -35.02838 -33.58710 -31.57899 -30.96350 -29.72010 -27.00780 -23.62331 -22.31857 -20.93889 -19.98947 -17.02473 -16.83065 -16.71006 -15.77440 -15.58954 -14.65071 -14.48084 -14.02905 -13.44775 -12.84696 -12.67290 -12.31296 -11.80504 -11.30602 -10.96045 -10.90046 -10.87666 -10.33973 -10.13168 -9.85627 -9.78066 -9.01329 -8.67677 -7.84878 -6.29818 -4.37198 2.06286 2.55613 2.72697 3.21428 3.27200 3.32472 3.40046 3.65129 4.28288 4.60483 4.92350 5.01515 5.16508 5.18401 5.49119 5.68294 6.20816 6.39076 6.85047 6.90656 7.11154 7.42054 7.59164 7.76639 7.79599 8.05350 8.65994 8.98218 9.28541 10.78326 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.063655 B = 0.006492 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.763187 B = 4311.869382 C = 4424.636102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.516 3.484 3 O -0.526 6.526 4 N -0.626 5.626 5 C 0.228 3.772 6 C -0.075 4.075 7 N -0.229 5.229 8 N -0.165 5.165 9 C 0.275 3.725 10 C -0.539 4.539 11 H 0.065 0.935 12 C 0.067 3.933 13 N -0.891 5.891 14 Si 0.911 3.089 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.310 5.310 19 H 0.079 0.921 20 H 0.100 0.900 21 H 0.099 0.901 22 H 0.415 0.585 23 H 0.200 0.800 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.678 3.911 -1.525 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.303 3.697 3 O -0.400 6.400 4 N -0.276 5.276 5 C -0.029 4.029 6 C -0.259 4.259 7 N -0.072 5.072 8 N -0.070 5.070 9 C 0.158 3.842 10 C -0.578 4.578 11 H 0.083 0.917 12 C -0.137 4.137 13 N -0.528 5.528 14 Si 0.738 3.262 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.196 1.196 18 N -0.151 5.151 19 H 0.098 0.902 20 H 0.118 0.882 21 H 0.118 0.882 22 H 0.251 0.749 23 H 0.216 0.784 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.005 3.740 -1.578 13.623 hybrid contribution -0.661 -0.300 0.936 1.184 sum -13.666 3.439 -0.642 14.107 Atomic orbital electron populations 1.21800 0.90057 1.04676 1.05734 1.20961 0.90730 0.82579 0.75410 1.90663 1.70031 1.31217 1.48113 1.42676 1.01957 1.10327 1.72623 1.20011 0.85388 0.93254 1.04226 1.24650 0.86379 1.01118 1.13787 1.73408 1.22881 0.97845 1.13094 1.51928 1.04804 1.00949 1.49273 1.19942 0.75283 0.89233 0.99725 1.21251 1.11794 1.33803 0.90950 0.91651 1.24909 0.95457 0.94823 0.98480 1.69909 1.17486 1.34175 1.31265 0.86273 0.77723 0.78871 0.83345 1.20256 1.20738 1.19628 1.77981 0.90506 1.20742 1.25885 0.90201 0.88193 0.88211 0.74872 0.78375 0.91865 0.91579 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 10.39 36.01 0.37 -0.69 15 2 C 0.52 6.45 7.91 -10.98 -0.09 6.36 15 3 O -0.53 -8.69 14.31 5.55 0.08 -8.61 15 4 N -0.63 -8.65 5.45 -11.11 -0.06 -8.71 15 5 C 0.23 4.47 8.19 -153.99 -1.26 3.21 15 6 C -0.08 -1.58 10.85 -17.33 -0.19 -1.77 15 7 N -0.23 -5.46 12.01 30.64 0.37 -5.09 15 8 N -0.16 -4.08 4.27 -11.66 -0.05 -4.13 15 9 C 0.27 7.22 6.44 -5.19 -0.03 7.19 15 10 C -0.54 -15.17 9.39 -34.44 -0.32 -15.50 15 11 H 0.07 1.90 7.81 -52.48 -0.41 1.49 15 12 C 0.07 1.85 5.46 -17.82 -0.10 1.75 15 13 N -0.89 -25.15 13.29 55.43 0.74 -24.41 15 14 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 15 15 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 18 N -0.31 -7.02 12.70 31.45 0.40 -6.62 15 19 H 0.08 0.32 7.91 -51.93 -0.41 -0.09 15 20 H 0.10 0.57 8.14 -51.93 -0.42 0.14 15 21 H 0.10 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.42 4.28 8.66 -40.82 -0.35 3.92 15 23 H 0.20 3.90 5.98 -52.49 -0.31 3.59 15 24 H 0.06 1.68 8.14 -51.93 -0.42 1.26 15 25 H 0.07 1.77 8.14 -51.93 -0.42 1.34 15 26 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 242.76 15.07 3.66 3.66 Total: -1.00 -32.64 242.76 -3.82 -36.46 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -2.31 Total: 0.63 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.62 Total: 0.55 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 1.39 Total: -48.95 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -32.64 -3.82 -36.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108292174.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.520 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds