Wall clock time and date at job start Mon Mar 30 2020 02:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38166 * 119.98632 * 2 1 4 4 C 1.38687 * 119.97033 * 180.02562 * 3 2 1 5 5 O 1.35944 * 120.03015 * 180.02562 * 4 3 2 6 6 C 1.42909 * 116.99943 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.46932 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00246 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00048 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99630 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00264 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46964 * 90.00365 * 11 9 7 13 13 H 1.48506 * 109.47224 * 209.99873 * 11 9 7 14 14 H 1.48493 * 109.47369 * 330.00153 * 11 9 7 15 15 C 1.38727 * 119.93795 * 359.97438 * 4 3 2 16 16 C 1.38130 * 119.97170 * 359.97438 * 15 4 3 17 17 C 1.38435 * 119.98248 * 179.97438 * 2 1 3 18 18 F 1.35101 * 119.97030 * 359.72758 * 17 2 1 19 19 H 1.08998 * 109.47129 * 270.02211 * 1 2 3 20 20 H 1.08996 * 109.46884 * 30.02204 * 1 2 3 21 21 H 1.08999 * 109.47390 * 150.02397 * 1 2 3 22 22 H 1.08001 * 120.01702 * 359.97438 * 3 2 1 23 23 H 1.08989 * 109.46820 * 300.00098 * 6 5 4 24 24 H 1.09002 * 109.46781 * 60.00059 * 6 5 4 25 25 H 0.97001 * 119.99934 * 179.97438 * 10 9 7 26 26 H 1.08007 * 120.01189 * 180.02562 * 15 4 3 27 27 H 1.08004 * 119.98188 * 180.02562 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1967 0.0000 4 6 3.5844 1.1963 -0.0005 5 8 4.2651 2.3731 0.0000 6 6 5.6921 2.2971 0.0000 7 6 6.2692 3.6892 -0.0001 8 1 5.6120 4.5463 0.0004 9 6 7.6362 3.8688 0.0004 10 7 8.4365 2.8252 0.0004 11 14 8.3516 5.5944 -0.0003 12 1 8.5406 6.0524 1.3996 13 1 9.6616 5.5869 -0.6997 14 1 7.4215 6.5156 -0.7012 15 6 4.2764 -0.0060 -0.0005 16 6 3.5835 -1.2010 0.0005 17 6 2.1988 -1.1991 0.0005 18 9 1.5223 -2.3685 0.0066 19 1 -0.3633 0.0004 1.0276 20 1 -0.3633 0.8898 -0.5142 21 1 -0.3634 -0.8902 -0.5134 22 1 1.6576 2.1321 -0.0004 23 1 6.0275 1.7644 0.8896 24 1 6.0276 1.7651 -0.8903 25 1 9.3982 2.9515 0.0004 26 1 5.3564 -0.0077 -0.0005 27 1 4.1221 -2.1371 0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135347603.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:17 Heat of formation + Delta-G solvation = -75.946354 kcal Electronic energy + Delta-G solvation = -13041.995069 eV Core-core repulsion = 10486.114190 eV Total energy + Delta-G solvation = -2555.880879 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.52479 -39.41546 -36.75294 -32.98172 -32.40511 -29.63391 -27.36226 -26.71396 -23.22125 -22.36895 -20.59222 -17.44284 -16.83665 -16.69692 -15.85744 -15.41954 -14.69481 -14.56831 -14.07061 -13.55467 -13.20410 -13.04138 -12.90215 -12.37729 -11.89654 -11.62665 -11.55743 -11.03312 -10.98844 -10.59091 -10.21676 -10.05614 -9.34022 -8.69947 -8.57537 -7.48919 -6.29421 -4.33435 1.48513 1.64981 3.21551 3.26926 3.31537 3.94927 4.07170 4.42381 4.63069 4.96154 5.04579 5.08029 5.40052 5.57327 5.63947 5.68300 5.88964 6.04494 6.28877 6.51726 6.53540 6.65602 6.87754 7.07536 7.14704 7.62873 7.89377 8.37400 8.78355 9.32058 10.81815 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.072539 B = 0.006262 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.908393 B = 4470.657622 C = 4836.119308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.084 4.084 3 C -0.146 4.146 4 C 0.150 3.850 5 O -0.313 6.313 6 C 0.191 3.809 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.914 3.086 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.270 1.270 15 C -0.191 4.191 16 C -0.107 4.107 17 C 0.030 3.970 18 F -0.150 7.150 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.135 0.865 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.268 0.732 26 H 0.143 0.857 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.422 -5.664 0.010 11.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.085 4.085 3 C -0.164 4.164 4 C 0.102 3.898 5 O -0.226 6.226 6 C 0.118 3.882 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.142 4.142 10 N -0.532 5.532 11 Si 0.741 3.259 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.195 1.195 15 C -0.210 4.210 16 C -0.126 4.126 17 C 0.011 3.989 18 F -0.128 7.128 19 H 0.090 0.910 20 H 0.090 0.910 21 H 0.086 0.914 22 H 0.153 0.847 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.160 0.840 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.302 -5.541 0.004 11.697 hybrid contribution 0.727 0.363 0.017 0.813 sum -9.574 -5.178 0.021 10.885 Atomic orbital electron populations 1.20685 0.90377 1.03007 1.02568 1.19582 0.96433 0.91295 1.01144 1.20146 0.91349 0.97659 1.07296 1.19262 0.91823 0.86450 0.92295 1.86150 1.24752 1.25903 1.85777 1.20706 0.70984 0.99475 0.97013 1.20964 0.91567 0.91401 1.52411 0.91072 1.24939 0.96363 0.98278 0.94598 1.69944 1.04151 1.29698 1.49427 0.86231 0.78336 0.82949 0.78412 1.20256 1.20882 1.19466 1.21343 1.01493 0.91263 1.06899 1.20873 0.91980 0.99048 1.00662 1.17278 0.89884 0.80727 1.11008 1.91405 1.80371 1.46262 1.94809 0.90965 0.91024 0.91387 0.84705 0.95910 0.95901 0.92266 0.83956 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.83 36.00 0.35 -0.92 15 2 C -0.08 -1.28 5.88 -104.58 -0.62 -1.90 15 3 C -0.15 -2.48 9.64 -39.44 -0.38 -2.86 15 4 C 0.15 3.01 6.69 -39.23 -0.26 2.75 15 5 O -0.31 -7.42 10.12 -19.56 -0.20 -7.62 15 6 C 0.19 4.96 4.49 36.00 0.16 5.13 15 7 C -0.53 -14.77 9.43 -34.44 -0.32 -15.10 15 8 H 0.07 1.98 7.81 -52.48 -0.41 1.57 15 9 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 10 N -0.89 -25.53 13.29 55.43 0.74 -24.79 15 11 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 15 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 15 C -0.19 -3.57 9.04 -39.44 -0.36 -3.92 15 16 C -0.11 -1.74 10.02 -39.53 -0.40 -2.13 15 17 C 0.03 0.49 7.24 -39.42 -0.29 0.20 15 18 F -0.15 -2.30 16.47 2.25 0.04 -2.27 15 19 H 0.07 0.76 8.14 -51.93 -0.42 0.33 15 20 H 0.07 0.73 8.08 -51.93 -0.42 0.31 15 21 H 0.07 0.75 7.64 -51.93 -0.40 0.35 15 22 H 0.14 2.06 8.06 -52.49 -0.42 1.64 15 23 H 0.02 0.61 7.66 -51.94 -0.40 0.22 15 24 H 0.02 0.62 7.66 -51.93 -0.40 0.22 15 25 H 0.27 7.15 8.31 -40.82 -0.34 6.82 15 26 H 0.14 2.74 6.30 -52.48 -0.33 2.41 15 27 H 0.13 1.81 8.06 -52.48 -0.42 1.39 15 LS Contribution 246.18 15.07 3.71 3.71 Total: -1.00 -28.77 246.18 -5.69 -34.46 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -2.76 Total: -2.27 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -2.20 Total: -17.18 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.74 Total: -24.79 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.20 Total: -7.62 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.77 -5.69 -34.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135347603.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.486 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds