Wall clock time and date at job start Mon Mar 30 2020 02:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38166 * 119.98632 * 2 1 4 4 C 1.38687 * 119.97033 * 180.02562 * 3 2 1 5 5 O 1.35944 * 120.03015 * 180.02562 * 4 3 2 6 6 C 1.42909 * 116.99943 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.46932 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00246 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00048 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99630 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00264 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46964 * 90.00365 * 11 9 7 13 13 H 1.48506 * 109.47224 * 209.99873 * 11 9 7 14 14 H 1.48493 * 109.47369 * 330.00153 * 11 9 7 15 15 C 1.38727 * 119.93795 * 359.97438 * 4 3 2 16 16 C 1.38130 * 119.97170 * 359.97438 * 15 4 3 17 17 C 1.38435 * 119.98248 * 179.97438 * 2 1 3 18 18 F 1.35101 * 119.97030 * 359.72758 * 17 2 1 19 19 H 1.08998 * 109.47129 * 270.02211 * 1 2 3 20 20 H 1.08996 * 109.46884 * 30.02204 * 1 2 3 21 21 H 1.08999 * 109.47390 * 150.02397 * 1 2 3 22 22 H 1.08001 * 120.01702 * 359.97438 * 3 2 1 23 23 H 1.08989 * 109.46820 * 300.00098 * 6 5 4 24 24 H 1.09002 * 109.46781 * 60.00059 * 6 5 4 25 25 H 0.97001 * 119.99934 * 179.97438 * 10 9 7 26 26 H 1.08007 * 120.01189 * 180.02562 * 15 4 3 27 27 H 1.08004 * 119.98188 * 180.02562 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1967 0.0000 4 6 3.5844 1.1963 -0.0005 5 8 4.2651 2.3731 0.0000 6 6 5.6921 2.2971 0.0000 7 6 6.2692 3.6892 -0.0001 8 1 5.6120 4.5463 0.0004 9 6 7.6362 3.8688 0.0004 10 7 8.4365 2.8252 0.0004 11 14 8.3516 5.5944 -0.0003 12 1 8.5406 6.0524 1.3996 13 1 9.6616 5.5869 -0.6997 14 1 7.4215 6.5156 -0.7012 15 6 4.2764 -0.0060 -0.0005 16 6 3.5835 -1.2010 0.0005 17 6 2.1988 -1.1991 0.0005 18 9 1.5223 -2.3685 0.0066 19 1 -0.3633 0.0004 1.0276 20 1 -0.3633 0.8898 -0.5142 21 1 -0.3634 -0.8902 -0.5134 22 1 1.6576 2.1321 -0.0004 23 1 6.0275 1.7644 0.8896 24 1 6.0276 1.7651 -0.8903 25 1 9.3982 2.9515 0.0004 26 1 5.3564 -0.0077 -0.0005 27 1 4.1221 -2.1371 0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135347603.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:17 Heat of formation + Delta-G solvation = -92.262345 kcal Electronic energy + Delta-G solvation = -13042.702584 eV Core-core repulsion = 10486.114190 eV Total energy + Delta-G solvation = -2556.588393 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.80839 -40.94358 -38.33179 -35.06955 -33.66026 -31.20957 -29.27250 -27.92364 -25.15152 -23.75090 -22.07135 -19.13623 -18.47054 -18.26042 -17.47624 -16.79051 -16.57696 -16.30274 -15.45357 -15.10363 -14.46446 -14.21733 -14.13057 -14.08069 -13.27238 -13.21221 -13.09782 -12.78491 -12.71315 -12.27524 -11.85963 -11.74781 -11.35472 -10.71566 -9.93843 -9.00565 -8.39994 -6.54101 0.14560 0.24041 1.40261 1.42609 1.54650 2.25670 2.55508 2.65837 2.95242 3.30515 3.73592 3.76737 4.07933 4.32278 4.38116 4.64240 4.73621 4.78362 4.93311 4.95911 5.10844 5.15314 5.27774 5.33411 5.50617 5.79425 5.83129 6.47629 6.74285 7.17785 8.72137 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.072539 B = 0.006262 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.908393 B = 4470.657622 C = 4836.119308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.075 4.075 3 C -0.142 4.142 4 C 0.112 3.888 5 O -0.332 6.332 6 C 0.208 3.792 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.987 3.013 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.263 1.263 15 C -0.204 4.204 16 C -0.104 4.104 17 C 0.034 3.966 18 F -0.141 7.141 19 H 0.089 0.911 20 H 0.089 0.911 21 H 0.077 0.923 22 H 0.152 0.848 23 H 0.005 0.995 24 H 0.005 0.995 25 H 0.274 0.726 26 H 0.126 0.874 27 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.729 -5.507 0.037 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.076 4.076 3 C -0.160 4.160 4 C 0.065 3.935 5 O -0.245 6.245 6 C 0.135 3.865 7 C -0.595 4.595 8 H 0.086 0.914 9 C -0.187 4.187 10 N -0.563 5.563 11 Si 0.809 3.191 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.187 1.187 15 C -0.223 4.223 16 C -0.122 4.122 17 C 0.015 3.985 18 F -0.120 7.120 19 H 0.108 0.892 20 H 0.108 0.892 21 H 0.096 0.904 22 H 0.170 0.830 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.083 0.917 26 H 0.143 0.857 27 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.636 -5.410 0.032 12.832 hybrid contribution 1.004 0.155 0.010 1.016 sum -10.632 -5.256 0.043 11.860 Atomic orbital electron populations 1.20815 0.87203 1.04460 1.04080 1.19989 0.98586 0.90148 0.98907 1.20376 0.89987 0.99239 1.06435 1.19662 0.93047 0.85727 0.95059 1.86069 1.23205 1.28053 1.87210 1.20253 0.72693 0.98323 0.95221 1.21320 0.92468 0.92094 1.53636 0.91392 1.25944 0.96439 1.02900 0.93461 1.70048 1.04704 1.32089 1.49504 0.85117 0.77650 0.77349 0.78935 1.19194 1.19850 1.18730 1.21260 1.00866 0.92012 1.08151 1.21057 0.92511 0.99017 0.99661 1.17403 0.89818 0.81330 1.09955 1.91434 1.80093 1.45829 1.94634 0.89239 0.89201 0.90399 0.83029 0.97722 0.97721 0.91713 0.85658 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.83 71.24 0.70 -1.43 15 2 C -0.08 -2.12 5.88 -19.84 -0.12 -2.24 15 3 C -0.14 -4.67 9.64 22.36 0.22 -4.45 15 4 C 0.11 4.57 6.69 22.49 0.15 4.72 15 5 O -0.33 -16.35 10.12 -92.92 -0.94 -17.29 15 6 C 0.21 11.41 4.49 71.23 0.32 11.73 15 7 C -0.56 -32.24 9.43 25.60 0.24 -32.00 15 8 H 0.07 3.86 7.81 -2.91 -0.02 3.84 15 9 C 0.01 0.68 5.46 84.65 0.46 1.14 15 10 N -0.93 -53.74 13.29 21.45 0.28 -53.46 15 11 Si 0.99 42.91 29.54 68.60 2.03 44.94 15 12 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 13 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 14 H -0.26 -11.06 7.11 99.48 0.71 -10.36 15 15 C -0.20 -7.83 9.04 22.36 0.20 -7.63 15 16 C -0.10 -3.29 10.02 22.30 0.22 -3.06 15 17 C 0.03 1.02 7.24 22.37 0.16 1.18 15 18 F -0.14 -3.93 16.47 44.97 0.74 -3.19 15 19 H 0.09 1.51 8.14 -2.39 -0.02 1.49 15 20 H 0.09 1.47 8.08 -2.39 -0.02 1.45 15 21 H 0.08 1.41 7.64 -2.39 -0.02 1.39 15 22 H 0.15 4.39 8.06 -2.91 -0.02 4.37 15 23 H 0.00 0.28 7.66 -2.39 -0.02 0.26 15 24 H 0.01 0.28 7.66 -2.39 -0.02 0.27 15 25 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 26 H 0.13 5.16 6.30 -2.91 -0.02 5.14 15 27 H 0.16 4.05 8.06 -2.91 -0.02 4.03 15 Total: -1.00 -62.14 246.18 5.84 -56.30 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.17 Total: 4.73 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 2.56 Total: -32.04 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.28 Total: -53.46 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.94 Total: -17.29 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.74 Total: -3.19 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -62.14 5.84 -56.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135347603.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.960 kcal (2) G-P(sol) polarization free energy of solvation -62.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds