Wall clock time and date at job start Mon Mar 30 2020 02:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46700 * 2 1 4 4 C 1.52996 * 109.47308 * 239.99882 * 2 1 3 5 5 C 1.50698 * 109.47212 * 119.99596 * 2 1 3 6 6 C 1.34531 * 122.32943 * 359.97438 * 5 2 1 7 7 S 1.75799 * 110.14864 * 179.97438 * 6 5 2 8 8 C 1.75896 * 91.12449 * 0.02562 * 7 6 5 9 9 C 1.39918 * 125.40756 * 179.97438 * 8 7 6 10 10 H 1.07994 * 119.99736 * 187.98323 * 9 8 7 11 11 C 1.40066 * 119.99641 * 7.97472 * 9 8 7 12 12 N 1.30872 * 120.00623 * 7.95748 * 11 9 8 13 13 Si 1.86803 * 119.99721 * 187.94806 * 11 9 8 14 14 H 1.48502 * 109.47089 * 84.99512 * 13 11 9 15 15 H 1.48498 * 109.47217 * 204.99341 * 13 11 9 16 16 H 1.48498 * 109.47391 * 324.99757 * 13 11 9 17 17 C 1.36804 * 122.32568 * 180.23719 * 5 2 1 18 18 H 1.09003 * 109.47297 * 299.99877 * 1 2 3 19 19 H 1.08999 * 109.47058 * 60.00584 * 1 2 3 20 20 H 1.08998 * 109.46842 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46801 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.46888 * 299.99520 * 3 2 1 23 23 H 1.08996 * 109.47705 * 59.99681 * 3 2 1 24 24 H 1.08998 * 109.47286 * 299.99871 * 4 2 1 25 25 H 1.09009 * 109.47384 * 59.99623 * 4 2 1 26 26 H 1.08998 * 109.47354 * 179.97438 * 4 2 1 27 27 H 1.08005 * 124.92712 * 359.96145 * 6 5 2 28 28 H 0.96994 * 119.99921 * 179.97438 * 12 11 9 29 29 H 1.08001 * 122.90683 * 0.02562 * 17 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 1.2004 -1.2384 2.1464 7 16 2.1230 -1.9874 3.4420 8 6 3.6381 -1.5409 2.6680 9 6 4.9157 -1.8263 3.1620 10 1 5.7864 -1.4012 2.6851 11 6 5.0652 -2.6632 4.2752 12 7 4.0297 -3.3016 4.7578 13 14 6.7428 -2.8682 5.0708 14 1 6.9663 -1.7698 6.0449 15 1 6.8002 -4.1740 5.7756 16 1 7.7957 -2.8237 4.0246 17 6 3.3661 -0.8583 1.4965 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1299 1.4426 -0.0005 22 1 1.6766 1.9563 -0.8900 23 1 1.6766 1.9565 0.8899 24 1 1.6768 -1.7489 -1.2492 25 1 1.6767 -0.2075 -2.1393 26 1 3.1300 -0.7209 -1.2494 27 1 0.1222 -1.2067 2.0935 28 1 4.1335 -3.8814 5.5284 29 1 4.1399 -0.4778 0.8461 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168745893.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:54 Heat of formation + Delta-G solvation = -25.300945 kcal Electronic energy + Delta-G solvation = -11782.018848 eV Core-core repulsion = 9794.547295 eV Total energy + Delta-G solvation = -1987.471553 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.48356 -36.38274 -34.66964 -30.63452 -28.58480 -28.00652 -26.29537 -23.93206 -21.26485 -19.65426 -18.19690 -17.16590 -16.49564 -15.94004 -15.00890 -14.77972 -14.38051 -13.91667 -13.59376 -13.22735 -13.04437 -13.04411 -12.78353 -12.55106 -12.46592 -12.27645 -11.96700 -11.72493 -11.40314 -11.36468 -11.17300 -10.65187 -9.27417 -8.85868 -8.47559 -6.41416 0.84551 1.36173 1.51549 1.52776 1.76062 2.10060 2.29150 2.33819 3.14497 4.10134 4.15107 4.27369 4.73175 4.81590 4.85252 4.92038 4.96439 5.02927 5.05870 5.07656 5.23778 5.32422 5.41567 5.51802 5.57834 5.76974 6.01695 6.21672 6.39660 6.71711 6.73788 8.11336 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.054356 B = 0.009176 C = 0.008319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.002437 B = 3050.584082 C = 3364.785858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.019 4.019 3 C -0.125 4.125 4 C -0.125 4.125 5 C -0.022 4.022 6 C -0.411 4.411 7 S 0.065 5.935 8 C 0.014 3.986 9 C -0.435 4.435 10 H 0.092 0.908 11 C 0.017 3.983 12 N -0.810 5.810 13 Si 1.006 2.994 14 H -0.259 1.259 15 H -0.262 1.262 16 H -0.255 1.255 17 C -0.366 4.366 18 H 0.047 0.953 19 H 0.074 0.926 20 H 0.046 0.954 21 H 0.042 0.958 22 H 0.077 0.923 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.136 0.864 28 H 0.303 0.697 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 3.149 -3.980 5.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.021 4.021 3 C -0.182 4.182 4 C -0.183 4.183 5 C -0.033 4.033 6 C -0.545 4.545 7 S 0.325 5.675 8 C -0.106 4.106 9 C -0.470 4.470 10 H 0.110 0.890 11 C -0.201 4.201 12 N -0.437 5.437 13 Si 0.824 3.176 14 H -0.183 1.183 15 H -0.186 1.186 16 H -0.179 1.179 17 C -0.392 4.392 18 H 0.066 0.934 19 H 0.093 0.907 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.096 0.904 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.154 0.846 28 H 0.115 0.885 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.678 2.241 -2.534 3.776 hybrid contribution 0.950 0.426 -0.742 1.279 sum -0.728 2.667 -3.276 4.287 Atomic orbital electron populations 1.21783 0.93738 1.01297 1.01681 1.19360 0.95805 0.94904 0.92046 1.21735 1.00427 0.94541 1.01526 1.21737 1.00407 0.99632 0.96496 1.18395 0.92152 0.97136 0.95602 1.25376 1.01475 1.22066 1.05607 1.84165 0.97828 1.59532 1.25989 1.22184 0.96643 0.96220 0.95564 1.19410 0.92735 1.23970 1.10869 0.88971 1.27141 1.04091 0.92564 0.96266 1.69155 1.33650 1.20396 1.20505 0.84829 0.75236 0.78985 0.78503 1.18310 1.18589 1.17896 1.19702 0.95551 1.21608 1.02292 0.93389 0.90687 0.93493 0.93851 0.90432 0.93879 0.94020 0.90403 0.93890 0.84620 0.88478 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 7.23 71.98 0.52 -3.48 15 2 C -0.02 -0.68 0.88 -52.93 -0.05 -0.73 15 3 C -0.12 -4.08 8.31 71.98 0.60 -3.48 15 4 C -0.13 -4.14 8.31 71.98 0.60 -3.54 15 5 C -0.02 -1.03 4.59 -21.05 -0.10 -1.13 15 6 C -0.41 -20.16 10.02 66.97 0.67 -19.48 15 7 S 0.07 3.48 20.42 -56.49 -1.15 2.33 15 8 C 0.01 0.76 6.15 22.69 0.14 0.90 15 9 C -0.43 -23.51 9.28 23.12 0.21 -23.30 15 10 H 0.09 4.76 7.86 -2.91 -0.02 4.74 15 11 C 0.02 0.83 5.47 85.28 0.47 1.30 15 12 N -0.81 -41.29 10.82 21.86 0.24 -41.05 15 13 Si 1.01 36.82 29.57 68.60 2.03 38.85 15 14 H -0.26 -9.17 7.11 99.48 0.71 -8.46 15 15 H -0.26 -8.97 7.11 99.48 0.71 -8.26 15 16 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 17 C -0.37 -19.26 9.00 21.95 0.20 -19.06 15 18 H 0.05 1.53 7.69 -2.39 -0.02 1.52 15 19 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 20 H 0.05 1.51 7.70 -2.39 -0.02 1.49 15 21 H 0.04 1.49 7.68 -2.39 -0.02 1.48 15 22 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 15 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 15 25 H 0.08 2.01 8.14 -2.38 -0.02 1.99 15 26 H 0.04 1.50 7.71 -2.39 -0.02 1.48 15 27 H 0.14 6.07 6.63 -2.91 -0.02 6.05 15 28 H 0.30 13.76 8.30 -92.71 -0.77 12.99 15 29 H 0.10 4.92 7.69 -2.91 -0.02 4.90 15 Total: -1.00 -59.19 253.34 5.49 -53.70 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 1.12 Total: 18.18 kcal Atomic # 6 Polarization: -75.27 SS G_CDS: 3.26 Total: -72.00 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.24 Total: -41.05 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.15 Total: 2.33 kcal Total: -59.19 5.49 -53.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168745893.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.403 kcal (2) G-P(sol) polarization free energy of solvation -59.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds