Wall clock time and date at job start Mon Mar 30 2020 02:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34814 * 116.99863 * 2 1 4 4 O 1.21545 * 120.00157 * 0.02562 * 3 2 1 5 5 C 1.47008 * 119.99851 * 179.97438 * 3 2 1 6 6 C 1.38484 * 126.89400 * 179.97438 * 5 3 2 7 7 C 1.39647 * 105.35636 * 180.02562 * 6 5 3 8 8 N 1.30871 * 107.87862 * 0.26720 * 7 6 5 9 9 N 1.28445 * 110.94487 * 359.54621 * 8 7 6 10 10 C 1.46498 * 125.19779 * 180.20812 * 9 8 7 11 11 C 1.50702 * 109.47401 * 270.28734 * 10 9 8 12 12 H 1.08000 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00342 * 179.97438 * 11 10 9 14 14 N 1.31524 * 119.99728 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00231 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47158 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47316 * 119.99731 * 15 13 11 18 18 H 1.48500 * 109.47029 * 239.99885 * 15 13 11 19 19 H 1.08994 * 109.46973 * 59.99901 * 1 2 3 20 20 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46481 * 299.99761 * 1 2 3 22 22 H 1.07998 * 127.32544 * 0.02562 * 6 5 3 23 23 H 1.08002 * 126.05767 * 179.97438 * 7 6 5 24 24 H 1.08995 * 109.47274 * 30.29060 * 10 9 8 25 25 H 1.09004 * 109.47230 * 150.28874 * 10 9 8 26 26 H 0.96994 * 119.99406 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4021 2.2206 0.0005 5 6 3.5321 1.2781 0.0006 6 6 4.3044 2.4277 0.0001 7 6 5.6284 1.9837 0.0004 8 7 5.6134 0.6751 -0.0049 9 7 4.4086 0.2297 0.0010 10 6 4.0316 -1.1859 0.0019 11 6 3.9020 -1.6723 -1.4186 12 1 4.0827 -0.9947 -2.2400 13 6 3.5536 -2.9825 -1.6697 14 7 3.3350 -3.8080 -0.6694 15 14 3.3936 -3.5854 -3.4304 16 1 3.6898 -2.4697 -4.3645 17 1 4.3534 -4.6945 -3.6630 18 1 2.0098 -4.0713 -3.6633 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3632 0.5138 0.8901 22 1 3.9567 3.4501 -0.0003 23 1 6.5087 2.6094 -0.0002 24 1 4.7982 -1.7657 0.5159 25 1 3.0782 -1.3078 0.5161 26 1 3.0896 -4.7296 -0.8461 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000199500927.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:33 Heat of formation + Delta-G solvation = -10.808801 kcal Electronic energy + Delta-G solvation = -13800.422583 eV Core-core repulsion = 11267.286242 eV Total energy + Delta-G solvation = -2533.136341 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.80033 -39.57686 -35.99546 -33.79234 -31.71856 -30.49960 -27.49942 -27.13897 -23.67926 -22.82139 -20.81799 -19.59938 -17.47858 -16.86565 -16.47909 -15.88717 -15.10001 -14.59274 -14.37729 -13.72341 -13.01109 -12.84332 -12.66786 -12.31044 -11.87777 -11.50610 -11.08763 -10.89865 -10.44637 -10.37211 -10.34168 -9.90888 -9.85607 -8.67246 -8.59965 -8.28562 -6.30080 -4.36103 1.66445 3.06654 3.18262 3.21019 3.26581 3.32225 3.49859 3.57576 4.27420 5.04557 5.16268 5.34118 5.45008 5.51962 5.78680 5.86646 6.01306 6.27345 6.68444 6.84322 6.96511 7.17160 7.49648 7.68666 7.79180 8.12951 8.63742 8.84950 9.28920 10.78873 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.012670 C = 0.009817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.492262 B = 2209.380023 C = 2851.386313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.327 6.327 3 C 0.548 3.452 4 O -0.517 6.517 5 C -0.041 4.041 6 C -0.173 4.173 7 C -0.036 4.036 8 N -0.262 5.262 9 N -0.216 5.216 10 C 0.238 3.762 11 C -0.531 4.531 12 H 0.064 0.936 13 C 0.069 3.931 14 N -0.888 5.888 15 Si 0.906 3.094 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 H 0.060 0.940 20 H 0.102 0.898 21 H 0.058 0.942 22 H 0.155 0.845 23 H 0.180 0.820 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.571 6.312 1.513 6.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.241 6.241 3 C 0.392 3.608 4 O -0.406 6.406 5 C -0.168 4.168 6 C -0.202 4.202 7 C -0.208 4.208 8 N -0.099 5.099 9 N -0.007 5.007 10 C 0.122 3.878 11 C -0.570 4.570 12 H 0.082 0.918 13 C -0.134 4.134 14 N -0.526 5.526 15 Si 0.733 3.267 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 H 0.079 0.921 20 H 0.120 0.880 21 H 0.076 0.924 22 H 0.173 0.827 23 H 0.197 0.803 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.232 5.310 1.564 5.968 hybrid contribution -0.813 0.322 -0.967 1.303 sum -3.045 5.632 0.597 6.430 Atomic orbital electron populations 1.23241 0.76783 1.03758 1.01783 1.86892 1.22825 1.31043 1.83371 1.19786 0.86892 0.81866 0.72207 1.90803 1.65802 1.36210 1.47746 1.20574 0.88631 0.89887 1.17682 1.21960 0.92461 0.97590 1.08178 1.23432 0.97267 0.90968 1.09109 1.73215 1.05337 1.13480 1.17870 1.47005 1.01186 1.09479 1.42999 1.20291 0.98472 0.68721 1.00293 1.21145 1.49016 0.96319 0.90515 0.91754 1.24856 0.94433 0.96007 0.98130 1.69929 1.46063 1.05721 1.30882 0.86297 0.77904 0.78849 0.83616 1.19601 1.20567 1.20611 0.92146 0.87951 0.92356 0.82726 0.80340 0.92219 0.90686 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.57 101.05 1.07 1.66 15 2 O -0.33 -6.68 8.03 -40.80 -0.33 -7.00 15 3 C 0.55 11.45 7.93 34.28 0.27 11.72 15 4 O -0.52 -10.82 16.71 -19.30 -0.32 -11.14 15 5 C -0.04 -0.87 6.96 -82.07 -0.57 -1.44 15 6 C -0.17 -3.17 10.85 -38.96 -0.42 -3.59 15 7 C -0.04 -0.65 12.03 -17.43 -0.21 -0.86 15 8 N -0.26 -5.73 11.90 30.58 0.36 -5.37 15 9 N -0.22 -5.00 3.33 -58.33 -0.19 -5.19 15 10 C 0.24 6.00 5.53 -5.19 -0.03 5.97 15 11 C -0.53 -14.38 9.39 -34.44 -0.32 -14.70 15 12 H 0.06 1.80 7.81 -52.49 -0.41 1.39 15 13 C 0.07 1.86 5.46 -17.82 -0.10 1.76 15 14 N -0.89 -24.37 13.29 55.43 0.74 -23.64 15 15 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 15 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 18 H -0.28 -6.29 7.11 56.52 0.40 -5.88 15 19 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 20 H 0.10 1.37 8.14 -51.93 -0.42 0.95 15 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.16 2.40 8.06 -52.49 -0.42 1.98 15 23 H 0.18 2.41 8.06 -52.49 -0.42 1.98 15 24 H 0.06 1.57 8.14 -51.93 -0.42 1.15 15 25 H 0.08 1.91 6.15 -51.93 -0.32 1.59 15 26 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 LS Contribution 243.77 15.07 3.67 3.67 Total: -1.00 -29.85 243.77 -3.80 -33.66 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -2.40 Total: -1.27 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.31 Total: 0.51 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.91 Total: -34.20 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.65 Total: -18.15 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.85 -3.80 -33.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199500927.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.850 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds