Wall clock time and date at job start Mon Mar 30 2020 02:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38152 * 120.38809 * 2 1 4 4 N 1.31914 * 120.79359 * 180.02562 * 3 2 1 5 5 C 1.32051 * 121.69063 * 0.02562 * 4 3 2 6 6 F 1.35104 * 119.65041 * 180.02562 * 5 4 3 7 7 C 1.38519 * 120.70112 * 0.26849 * 5 4 3 8 8 C 1.50710 * 120.43065 * 179.70531 * 7 5 4 9 9 H 1.09002 * 109.47040 * 40.00534 * 8 7 5 10 10 N 1.46899 * 109.46755 * 160.00294 * 8 7 5 11 11 C 1.50700 * 109.47074 * 280.00319 * 8 7 5 12 12 H 1.07996 * 120.00009 * 359.97438 * 11 8 7 13 13 C 1.37874 * 119.99634 * 180.02562 * 11 8 7 14 14 N 1.31509 * 120.00160 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99649 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47246 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47185 * 120.00270 * 15 13 11 18 18 H 1.48503 * 109.46852 * 240.00059 * 15 13 11 19 19 C 1.38548 * 119.13736 * 359.46407 * 7 5 4 20 20 H 1.09004 * 109.47168 * 89.99944 * 1 2 3 21 21 H 1.08994 * 109.47481 * 210.00129 * 1 2 3 22 22 H 1.09003 * 109.47139 * 330.00411 * 1 2 3 23 23 H 1.07998 * 119.60308 * 359.97438 * 3 2 1 24 24 H 1.00900 * 111.00097 * 296.04752 * 10 8 7 25 25 H 1.00902 * 111.00143 * 60.00702 * 10 8 7 26 26 H 0.96997 * 119.99974 * 179.97438 * 14 13 11 27 27 H 1.08004 * 120.77224 * 180.23942 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1917 0.0000 4 7 3.5249 1.2011 -0.0005 5 6 4.2266 0.0824 -0.0015 6 9 5.5764 0.1400 -0.0015 7 6 3.5933 -1.1496 -0.0077 8 6 4.4001 -2.4225 -0.0155 9 1 5.2602 -2.3116 0.6449 10 7 3.5634 -3.5354 0.4528 11 6 4.8761 -2.7070 -1.4168 12 1 4.6197 -2.0336 -2.2213 13 6 5.6381 -3.8274 -1.6719 14 7 5.9490 -4.6481 -0.6925 15 14 6.2287 -4.1796 -3.4087 16 1 5.7468 -3.1120 -4.3215 17 1 7.7131 -4.2161 -3.4289 18 1 5.6951 -5.4911 -3.8566 19 6 2.2087 -1.1964 -0.0015 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6657 2.1269 -0.0004 24 1 3.2845 -3.3990 1.4129 25 1 2.7588 -3.6587 -0.1435 26 1 6.4847 -5.4365 -0.8720 27 1 1.6878 -2.1425 -0.0022 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211773877.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:40 Heat of formation + Delta-G solvation = -10.110202 kcal Electronic energy + Delta-G solvation = -13624.815247 eV Core-core repulsion = 11104.081989 eV Total energy + Delta-G solvation = -2520.733258 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.18782 -39.73087 -35.20591 -33.16102 -31.93183 -29.78643 -26.89012 -26.19890 -23.79384 -21.99398 -20.14590 -17.45719 -16.85655 -16.58779 -15.24601 -14.85531 -14.38155 -14.21008 -13.61917 -13.58093 -13.23014 -12.89765 -12.42226 -12.15716 -12.03249 -11.84496 -11.22713 -10.87226 -10.71275 -10.01238 -9.61651 -9.26106 -8.99513 -8.50002 -8.03728 -7.26887 -5.93986 -4.10014 1.41376 1.63242 3.31018 3.39050 3.43213 4.03294 4.19152 4.45803 4.99060 5.08473 5.14380 5.24773 5.32980 5.62954 5.76923 5.87648 6.02849 6.09707 6.31264 6.46282 6.58884 7.17973 7.29764 7.82887 8.05603 8.10196 8.48201 8.85682 9.02706 9.59073 11.10408 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.036711 B = 0.010182 C = 0.009395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.537456 B = 2749.394741 C = 2979.485492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.153 4.153 3 C 0.101 3.899 4 N -0.517 5.517 5 C 0.297 3.703 6 F -0.107 7.107 7 C -0.136 4.136 8 C 0.259 3.741 9 H 0.057 0.943 10 N -0.807 5.807 11 C -0.532 4.532 12 H 0.053 0.947 13 C 0.086 3.914 14 N -0.844 5.844 15 Si 0.888 3.112 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.070 4.070 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.155 0.845 24 H 0.300 0.700 25 H 0.319 0.681 26 H 0.257 0.743 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 6.652 1.951 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.155 4.155 3 C -0.056 4.056 4 N -0.231 5.231 5 C 0.143 3.857 6 F -0.086 7.086 7 C -0.142 4.142 8 C 0.149 3.851 9 H 0.075 0.925 10 N -0.333 5.333 11 C -0.570 4.570 12 H 0.071 0.929 13 C -0.121 4.121 14 N -0.479 5.479 15 Si 0.715 3.285 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.096 4.096 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.172 0.828 24 H 0.111 0.889 25 H 0.132 0.868 26 H 0.067 0.933 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.248 6.779 1.877 10.841 hybrid contribution -0.540 -0.193 -0.895 1.063 sum -8.788 6.587 0.982 11.026 Atomic orbital electron populations 1.20632 0.90379 1.02657 1.02312 1.20835 0.97381 0.94158 1.03147 1.22090 0.87738 0.97414 0.98359 1.66878 1.09522 1.31203 1.15493 1.18016 0.78804 0.89381 0.99500 1.91604 1.27051 1.96856 1.93102 1.22696 0.95770 0.99063 0.96667 1.18180 0.90133 0.79076 0.97736 0.92520 1.59120 1.23983 1.47094 1.03139 1.20739 1.34786 1.09628 0.91888 0.92879 1.24913 0.94947 0.95711 0.96543 1.70101 1.34884 1.12158 1.30714 0.86632 0.78608 0.78142 0.85123 1.19875 1.20868 1.20929 1.21235 0.92899 0.98149 0.97302 0.91174 0.91497 0.91558 0.82828 0.88895 0.86802 0.93310 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.04 36.00 0.36 -0.70 15 2 C -0.15 -2.27 5.90 -104.48 -0.62 -2.89 15 3 C 0.10 1.59 10.86 -17.55 -0.19 1.40 15 4 N -0.52 -10.15 10.37 -13.59 -0.14 -10.29 15 5 C 0.30 6.46 8.36 -17.35 -0.15 6.31 15 6 F -0.11 -2.49 16.70 2.25 0.04 -2.45 15 7 C -0.14 -2.89 5.03 -104.40 -0.53 -3.42 15 8 C 0.26 6.37 2.58 -70.01 -0.18 6.19 15 9 H 0.06 1.56 7.96 -51.93 -0.41 1.15 15 10 N -0.81 -18.08 8.03 -6.65 -0.05 -18.13 15 11 C -0.53 -14.60 8.71 -34.44 -0.30 -14.90 15 12 H 0.05 1.49 7.74 -52.49 -0.41 1.08 15 13 C 0.09 2.40 5.39 -17.82 -0.10 2.30 15 14 N -0.84 -24.33 12.77 55.43 0.71 -23.62 15 15 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 15 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 19 C -0.07 -1.22 9.03 -39.30 -0.36 -1.58 15 20 H 0.07 0.68 8.14 -51.93 -0.42 0.25 15 21 H 0.07 0.64 8.10 -51.93 -0.42 0.22 15 22 H 0.07 0.56 8.09 -51.93 -0.42 0.14 15 23 H 0.15 1.84 8.06 -52.49 -0.42 1.41 15 24 H 0.30 5.92 9.06 -39.29 -0.36 5.56 15 25 H 0.32 6.65 7.35 -39.29 -0.29 6.36 15 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 27 H 0.14 2.13 6.37 -52.48 -0.33 1.80 15 LS Contribution 243.79 15.07 3.67 3.67 Total: -1.00 -30.50 243.79 -5.46 -35.96 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -2.62 Total: 5.79 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.05 Total: -7.29 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.51 Total: -52.05 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.50 -5.46 -35.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211773877.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.852 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds