Wall clock time and date at job start Mon Mar 30 2020 02:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86803 * 120.00291 * 2 1 4 4 H 1.48500 * 109.46947 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46859 * 120.00140 * 3 2 1 6 6 H 1.48501 * 109.47170 * 239.99983 * 3 2 1 7 7 C 1.39941 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99561 * 206.52525 * 7 2 1 9 9 C 1.41149 * 120.00200 * 26.52478 * 7 2 1 10 10 C 1.40723 * 120.28821 * 25.26787 * 9 7 2 11 11 C 1.36486 * 119.92690 * 179.97438 * 10 9 7 12 12 C 1.38823 * 120.54052 * 0.02562 * 11 10 9 13 13 C 1.38309 * 120.59178 * 359.97438 * 12 11 10 14 14 C 1.38449 * 120.04764 * 359.74123 * 13 12 11 15 15 O 1.35642 * 120.26131 * 180.25632 * 14 13 12 16 16 C 1.42896 * 117.00365 * 0.28192 * 15 14 13 17 17 C 1.52996 * 109.47131 * 180.02562 * 16 15 14 18 18 F 1.39898 * 109.47442 * 64.99229 * 17 16 15 19 19 H 0.97002 * 120.00148 * 185.88788 * 1 2 3 20 20 H 1.07996 * 120.03392 * 359.94804 * 10 9 7 21 21 H 1.07998 * 119.72863 * 179.97438 * 11 10 9 22 22 H 1.07997 * 119.70613 * 179.97438 * 12 11 10 23 23 H 1.08001 * 119.97284 * 180.02562 * 13 12 11 24 24 H 1.09007 * 109.46493 * 299.99414 * 16 15 14 25 25 H 1.08992 * 109.47395 * 59.99301 * 16 15 14 26 26 H 1.08997 * 109.47277 * 184.99557 * 17 16 15 27 27 H 1.09000 * 109.46878 * 304.99237 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2777 2.7465 0.0006 5 1 3.0965 1.6963 1.2125 6 1 3.0965 1.6963 -1.2125 7 6 2.0082 -1.2120 -0.0005 8 1 3.0031 -1.2614 0.4172 9 6 1.4139 -2.3698 -0.5469 10 6 0.4141 -2.2574 -1.5309 11 6 -0.1553 -3.3819 -2.0546 12 6 0.2431 -4.6402 -1.6244 13 6 1.2237 -4.7761 -0.6585 14 6 1.8219 -3.6520 -0.1149 15 8 2.7877 -3.7803 0.8288 16 6 3.1461 -5.1090 1.2138 17 6 4.2420 -5.0528 2.2800 18 9 3.7349 -4.4556 3.4390 19 1 -0.4850 -0.8356 0.0862 20 1 0.0974 -1.2825 -1.8709 21 1 -0.9226 -3.2919 -2.8092 22 1 -0.2168 -5.5209 -2.0476 23 1 1.5263 -5.7599 -0.3315 24 1 2.2715 -5.6183 1.6187 25 1 3.5129 -5.6530 0.3435 26 1 4.5778 -6.0641 2.5094 27 1 5.0820 -4.4669 1.9070 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212795979.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:43 Heat of formation + Delta-G solvation = -101.031257 kcal Electronic energy + Delta-G solvation = -13482.298982 eV Core-core repulsion = 10925.330341 eV Total energy + Delta-G solvation = -2556.968642 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -48.59858 -40.58761 -38.15312 -35.72451 -32.18824 -31.11952 -30.18117 -26.92434 -24.57277 -22.78539 -22.20055 -19.99460 -18.61544 -17.52430 -16.98758 -16.63878 -16.34872 -15.81166 -15.70718 -15.53273 -14.83680 -14.49669 -13.91369 -13.64412 -13.07840 -12.76333 -12.43897 -12.19455 -12.01726 -11.92897 -11.79508 -11.65510 -11.25157 -10.84477 -9.62480 -9.31959 -8.91611 -6.34459 0.82050 0.92694 1.49458 1.62828 1.79703 2.33943 2.53745 2.66425 3.48764 3.66363 3.86079 4.03787 4.23131 4.28826 4.34863 4.42587 4.60905 4.85713 4.91278 5.13723 5.26661 5.50100 5.73356 5.79575 5.97009 6.12790 6.32636 6.47471 6.88843 7.08074 8.04238 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.023442 B = 0.012367 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.132406 B = 2263.577653 C = 3275.210745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.002 3.998 3 Si 1.116 2.884 4 H -0.267 1.267 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.049 3.951 10 C -0.220 4.220 11 C -0.115 4.115 12 C -0.216 4.216 13 C -0.169 4.169 14 C -0.007 4.007 15 O -0.333 6.333 16 C 0.015 3.985 17 C 0.067 3.933 18 F -0.237 7.237 19 H 0.281 0.719 20 H 0.094 0.906 21 H 0.118 0.882 22 H 0.130 0.870 23 H 0.133 0.867 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.140 0.860 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 -7.522 0.847 9.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.213 4.213 3 Si 0.933 3.067 4 H -0.192 1.192 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.046 3.954 10 C -0.240 4.240 11 C -0.133 4.133 12 C -0.235 4.235 13 C -0.188 4.188 14 C -0.051 4.051 15 O -0.249 6.249 16 C -0.060 4.060 17 C 0.013 3.987 18 F -0.219 7.219 19 H 0.093 0.907 20 H 0.112 0.888 21 H 0.136 0.864 22 H 0.148 0.852 23 H 0.151 0.849 24 H 0.081 0.919 25 H 0.109 0.891 26 H 0.158 0.842 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.802 -5.736 0.922 8.210 hybrid contribution -0.197 -1.884 0.067 1.895 sum 5.605 -7.620 0.990 9.511 Atomic orbital electron populations 1.70588 1.08806 1.32911 1.31866 1.28434 0.95699 1.07332 0.89831 0.83039 0.74842 0.69873 0.78994 1.19168 1.18713 1.18628 1.20478 1.03673 0.95419 1.37711 0.91790 1.17514 0.93700 0.91276 0.92930 1.20679 1.04084 0.97897 1.01293 1.20647 0.99812 0.92800 1.00072 1.20603 1.02843 0.96758 1.03316 1.21063 1.00484 0.96455 1.00806 1.19315 0.96117 0.94379 0.95272 1.85941 1.53979 1.29339 1.55597 1.23595 0.99136 0.84122 0.99183 1.22363 0.95291 1.01344 0.79703 1.92739 1.89589 1.86915 1.52616 0.90705 0.88836 0.86396 0.85244 0.84927 0.91882 0.89076 0.84213 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.32 12.32 21.83 0.27 -46.05 15 2 C 0.00 0.12 4.91 85.25 0.42 0.54 15 3 Si 1.12 45.77 30.01 68.60 2.06 47.83 15 4 H -0.27 -10.55 7.11 99.48 0.71 -9.84 15 5 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 7 C -0.54 -31.55 8.64 23.40 0.20 -31.35 15 8 H 0.06 3.76 7.72 -2.91 -0.02 3.74 15 9 C 0.05 2.75 5.30 -21.20 -0.11 2.64 15 10 C -0.22 -11.75 7.93 22.47 0.18 -11.57 15 11 C -0.11 -5.28 9.97 22.00 0.22 -5.06 15 12 C -0.22 -9.09 10.04 22.43 0.23 -8.86 15 13 C -0.17 -7.31 9.04 22.34 0.20 -7.11 15 14 C -0.01 -0.33 6.72 23.08 0.16 -0.18 15 15 O -0.33 -15.67 9.43 -89.56 -0.84 -16.51 15 16 C 0.02 0.49 5.20 71.98 0.37 0.87 15 17 C 0.07 1.71 7.92 71.98 0.57 2.28 15 18 F -0.24 -8.18 17.35 44.97 0.78 -7.40 15 19 H 0.28 16.57 6.78 -92.71 -0.63 15.94 15 20 H 0.09 5.20 6.52 -2.91 -0.02 5.18 15 21 H 0.12 4.66 8.06 -2.91 -0.02 4.64 15 22 H 0.13 4.44 8.06 -2.91 -0.02 4.42 15 23 H 0.13 4.63 6.31 -2.91 -0.02 4.61 15 24 H 0.06 1.96 7.66 -2.38 -0.02 1.94 15 25 H 0.09 2.42 7.68 -2.39 -0.02 2.40 15 26 H 0.14 2.08 8.14 -2.39 -0.02 2.06 15 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 15 Total: -1.00 -67.52 241.16 6.01 -61.51 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.31 Total: 18.43 kcal Atomic # 6 Polarization: -60.24 SS G_CDS: 2.43 Total: -57.81 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.27 Total: -46.05 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.84 Total: -16.51 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 0.78 Total: -7.40 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.06 Total: 47.83 kcal Total: -67.52 6.01 -61.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212795979.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.522 kcal (2) G-P(sol) polarization free energy of solvation -67.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds