Wall clock time and date at job start Mon Mar 30 2020 02:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46992 * 179.97438 * 5 3 2 7 7 C 1.34504 * 125.67452 * 125.00053 * 6 5 3 8 8 C 1.39282 * 107.18847 * 180.02562 * 7 6 5 9 9 C 1.41599 * 126.55714 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99839 * 359.97438 * 9 8 7 11 11 C 1.39694 * 119.99987 * 179.97438 * 9 8 7 12 12 N 1.31028 * 119.99970 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99802 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47250 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.46967 * 119.99934 * 13 11 9 16 16 H 1.48508 * 109.46722 * 239.99491 * 13 11 9 17 17 C 1.41884 * 106.88342 * 359.97438 * 8 7 6 18 18 N 1.30313 * 108.04682 * 359.72321 * 17 8 7 19 19 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 21 21 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 23 23 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 24 24 H 1.08004 * 126.40983 * 359.96244 * 7 6 5 25 25 H 0.96997 * 120.00257 * 180.02562 * 12 11 9 26 26 H 1.08002 * 125.97247 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.8053 3.2545 0.8935 8 6 4.9363 4.5931 0.5317 9 6 5.7113 5.5744 1.1962 10 1 6.2765 5.3103 2.0777 11 6 5.7446 6.8841 0.7115 12 7 5.0592 7.2044 -0.3583 13 14 6.7664 8.1788 1.5885 14 1 7.4402 7.5666 2.7617 15 1 7.7884 8.7182 0.6558 16 1 5.8823 9.2812 2.0454 17 6 4.1447 4.7854 -0.6300 18 7 3.5926 3.6452 -0.9355 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 3.9563 0.7806 0.8892 23 1 3.9557 0.7809 -0.8908 24 1 5.2763 2.7691 1.7356 25 1 5.0826 8.1138 -0.6952 26 1 4.0243 5.7133 -1.1692 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214198171.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:42 Heat of formation + Delta-G solvation = -5.782851 kcal Electronic energy + Delta-G solvation = -13313.671010 eV Core-core repulsion = 10780.752610 eV Total energy + Delta-G solvation = -2532.918399 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.21417 -39.02465 -36.17378 -33.65375 -31.97270 -28.98422 -28.30889 -26.43622 -24.30589 -21.24497 -19.57613 -19.15765 -17.38558 -17.21237 -16.37882 -16.02002 -14.96459 -14.62040 -13.97561 -13.45464 -12.87873 -12.72016 -12.40174 -11.95510 -11.77436 -11.20153 -11.13639 -10.95812 -10.64073 -10.42703 -10.20183 -10.00593 -9.24381 -8.78406 -7.83414 -7.18136 -6.42788 -3.99702 2.51358 2.65032 3.08403 3.21739 3.26768 3.53536 3.85058 4.14681 4.44374 5.04071 5.15879 5.17736 5.24985 5.49149 5.54988 5.62557 6.36863 6.53745 6.82711 7.32465 7.50051 7.67658 8.02805 8.15306 8.50574 8.65488 9.04932 9.17200 9.49743 10.56632 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.082815 B = 0.006715 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.023530 B = 4168.471579 C = 4276.893215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.436 3.564 4 O -0.471 6.471 5 C 0.168 3.832 6 N -0.394 5.394 7 C -0.134 4.134 8 C -0.011 4.011 9 C -0.437 4.437 10 H 0.070 0.930 11 C 0.066 3.934 12 N -0.840 5.840 13 Si 0.916 3.084 14 H -0.266 1.266 15 H -0.278 1.278 16 H -0.278 1.278 17 C 0.038 3.962 18 N -0.317 5.317 19 H 0.097 0.903 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.120 0.880 23 H 0.105 0.895 24 H 0.142 0.858 25 H 0.274 0.726 26 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 -10.153 1.123 10.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.276 3.724 4 O -0.354 6.354 5 C 0.042 3.958 6 N -0.185 5.185 7 C -0.272 4.272 8 C -0.021 4.021 9 C -0.471 4.471 10 H 0.088 0.912 11 C -0.144 4.144 12 N -0.472 5.472 13 Si 0.742 3.258 14 H -0.190 1.190 15 H -0.203 1.203 16 H -0.204 1.204 17 C -0.151 4.151 18 N -0.138 5.138 19 H 0.116 0.884 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.138 0.862 23 H 0.123 0.877 24 H 0.160 0.840 25 H 0.085 0.915 26 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.450 -10.345 0.237 11.264 hybrid contribution 0.721 1.041 1.065 1.655 sum -3.730 -9.304 1.302 10.108 Atomic orbital electron populations 1.23171 0.76925 1.03088 1.02482 1.86485 1.23073 1.34034 1.85041 1.24466 0.92813 0.81496 0.73670 1.90742 1.66328 1.36071 1.42293 1.20494 0.86896 0.82990 1.05396 1.46899 1.40980 1.05988 1.24589 1.22114 1.08214 0.95300 1.01523 1.18227 0.98099 0.90709 0.95033 1.18783 1.25219 0.92493 1.10609 0.91177 1.25677 0.94983 0.99296 0.94492 1.69461 1.36851 1.20041 1.20802 0.86137 0.79662 0.80211 0.79764 1.19005 1.20343 1.20364 1.25188 0.96194 0.95584 0.98115 1.76651 1.24005 0.98767 1.14333 0.88434 0.92191 0.92071 0.86226 0.87715 0.84005 0.91540 0.77980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 15 2 O -0.37 -5.31 10.56 -39.26 -0.41 -5.72 15 3 C 0.44 7.83 7.98 36.01 0.29 8.11 15 4 O -0.47 -10.61 15.45 -18.75 -0.29 -10.90 15 5 C 0.17 2.84 7.08 -5.19 -0.04 2.81 15 6 N -0.39 -9.18 3.37 -61.58 -0.21 -9.39 15 7 C -0.13 -3.30 11.50 -15.99 -0.18 -3.48 15 8 C -0.01 -0.31 5.93 -106.83 -0.63 -0.94 15 9 C -0.44 -12.07 9.40 -37.76 -0.35 -12.43 15 10 H 0.07 1.85 7.84 -52.48 -0.41 1.44 15 11 C 0.07 1.74 5.49 -17.35 -0.10 1.65 15 12 N -0.84 -22.62 10.33 55.54 0.57 -22.04 15 13 Si 0.92 19.80 29.56 -169.99 -5.02 14.78 15 14 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 17 C 0.04 1.08 10.91 -16.80 -0.18 0.89 15 18 N -0.32 -8.46 11.53 30.97 0.36 -8.11 15 19 H 0.10 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.06 0.70 8.13 -51.93 -0.42 0.27 15 21 H 0.06 0.72 8.13 -51.93 -0.42 0.30 15 22 H 0.12 1.56 8.06 -51.93 -0.42 1.14 15 23 H 0.11 1.50 8.14 -51.93 -0.42 1.08 15 24 H 0.14 3.02 8.06 -52.48 -0.42 2.59 15 25 H 0.27 6.75 8.30 -40.82 -0.34 6.42 15 26 H 0.20 5.78 5.77 -52.49 -0.30 5.47 15 LS Contribution 241.57 15.07 3.64 3.64 Total: -1.00 -33.02 241.57 -3.88 -36.90 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -2.38 Total: 2.74 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -0.13 Total: -1.90 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.72 Total: -39.54 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.70 Total: -16.62 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -33.02 -3.88 -36.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214198171.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.117 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds