Wall clock time and date at job start Mon Mar 30 2020 02:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46992 * 179.97438 * 5 3 2 7 7 C 1.34504 * 125.67452 * 125.00053 * 6 5 3 8 8 C 1.39282 * 107.18847 * 180.02562 * 7 6 5 9 9 C 1.41599 * 126.55714 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99839 * 359.97438 * 9 8 7 11 11 C 1.39694 * 119.99987 * 179.97438 * 9 8 7 12 12 N 1.31028 * 119.99970 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99802 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47250 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.46967 * 119.99934 * 13 11 9 16 16 H 1.48508 * 109.46722 * 239.99491 * 13 11 9 17 17 C 1.41884 * 106.88342 * 359.97438 * 8 7 6 18 18 N 1.30313 * 108.04682 * 359.72321 * 17 8 7 19 19 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 21 21 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 23 23 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 24 24 H 1.08004 * 126.40983 * 359.96244 * 7 6 5 25 25 H 0.96997 * 120.00257 * 180.02562 * 12 11 9 26 26 H 1.08002 * 125.97247 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.8053 3.2545 0.8935 8 6 4.9363 4.5931 0.5317 9 6 5.7113 5.5744 1.1962 10 1 6.2765 5.3103 2.0777 11 6 5.7446 6.8841 0.7115 12 7 5.0592 7.2044 -0.3583 13 14 6.7664 8.1788 1.5885 14 1 7.4402 7.5666 2.7617 15 1 7.7884 8.7182 0.6558 16 1 5.8823 9.2812 2.0454 17 6 4.1447 4.7854 -0.6300 18 7 3.5926 3.6452 -0.9355 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 3.9563 0.7806 0.8892 23 1 3.9557 0.7809 -0.8908 24 1 5.2763 2.7691 1.7356 25 1 5.0826 8.1138 -0.6952 26 1 4.0243 5.7133 -1.1692 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214198171.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:42 Heat of formation + Delta-G solvation = -28.257776 kcal Electronic energy + Delta-G solvation = -13314.645595 eV Core-core repulsion = 10780.752610 eV Total energy + Delta-G solvation = -2533.892985 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.70062 -40.82518 -37.54588 -35.54819 -33.69503 -30.97363 -29.71512 -27.84632 -26.17627 -22.74311 -21.51927 -20.94663 -19.13123 -18.72942 -17.72231 -17.39021 -16.84713 -16.33303 -15.42554 -14.86652 -14.64392 -14.32418 -14.06643 -13.42719 -13.09421 -12.98445 -12.85844 -12.72228 -12.39874 -11.83467 -11.82718 -11.65920 -11.14437 -10.78007 -9.76456 -9.16815 -8.34883 -6.02141 1.12496 1.13109 1.45206 1.46730 1.61213 1.78104 2.22268 2.35412 2.42576 3.57358 3.80940 3.95700 4.23812 4.29987 4.31234 4.55596 4.67397 4.85111 5.26819 5.32487 5.51816 5.71195 6.09755 6.54723 6.59148 6.80293 7.08040 7.16772 7.50043 8.66162 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.082815 B = 0.006715 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.023530 B = 4168.471579 C = 4276.893215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.444 3.556 4 O -0.527 6.527 5 C 0.153 3.847 6 N -0.384 5.384 7 C -0.109 4.109 8 C -0.060 4.060 9 C -0.471 4.471 10 H 0.074 0.926 11 C 0.017 3.983 12 N -0.872 5.872 13 Si 0.991 3.009 14 H -0.258 1.258 15 H -0.271 1.271 16 H -0.275 1.275 17 C 0.004 3.996 18 N -0.336 5.336 19 H 0.143 0.857 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.169 0.831 23 H 0.139 0.861 24 H 0.181 0.819 25 H 0.278 0.722 26 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 -12.094 2.249 12.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.271 6.271 3 C 0.286 3.714 4 O -0.414 6.414 5 C 0.030 3.970 6 N -0.174 5.174 7 C -0.249 4.249 8 C -0.070 4.070 9 C -0.505 4.505 10 H 0.092 0.908 11 C -0.190 4.190 12 N -0.504 5.504 13 Si 0.814 3.186 14 H -0.182 1.182 15 H -0.196 1.196 16 H -0.200 1.200 17 C -0.183 4.183 18 N -0.159 5.159 19 H 0.160 0.840 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.186 0.814 23 H 0.157 0.843 24 H 0.198 0.802 25 H 0.089 0.911 26 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.957 -12.346 1.342 13.034 hybrid contribution 0.439 1.344 0.708 1.581 sum -3.518 -11.003 2.050 11.732 Atomic orbital electron populations 1.23534 0.74911 1.05874 1.02021 1.86469 1.24866 1.31720 1.84075 1.24503 0.93121 0.81590 0.72169 1.90747 1.67512 1.38007 1.45168 1.21164 0.86682 0.79727 1.09428 1.47324 1.39458 1.07762 1.22865 1.22690 1.06443 0.94465 1.01348 1.18669 0.99668 0.92695 0.95963 1.19073 1.26377 0.93651 1.11391 0.90756 1.26601 0.96050 1.01222 0.95162 1.69582 1.38028 1.20698 1.22085 0.85003 0.77891 0.77072 0.78642 1.18177 1.19644 1.20008 1.24963 0.98124 0.95873 0.99313 1.76544 1.24471 0.99166 1.15713 0.83951 0.92567 0.92781 0.81350 0.84337 0.80183 0.91137 0.79774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 15 2 O -0.36 -9.10 10.56 -51.41 -0.54 -9.64 15 3 C 0.44 14.93 7.98 71.24 0.57 15.50 15 4 O -0.53 -23.48 15.45 21.97 0.34 -23.14 15 5 C 0.15 4.61 7.08 85.63 0.61 5.22 15 6 N -0.38 -17.26 3.37 -348.73 -1.18 -18.44 15 7 C -0.11 -5.17 11.50 84.53 0.97 -4.20 15 8 C -0.06 -3.41 5.93 -21.30 -0.13 -3.53 15 9 C -0.47 -26.40 9.40 23.45 0.22 -26.18 15 10 H 0.07 3.92 7.84 -2.91 -0.02 3.90 15 11 C 0.02 0.89 5.49 85.16 0.47 1.36 15 12 N -0.87 -48.63 10.33 21.79 0.22 -48.40 15 13 Si 0.99 40.95 29.56 68.60 2.03 42.98 15 14 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 15 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 15 17 C 0.00 0.23 10.91 85.82 0.94 1.17 15 18 N -0.34 -18.15 11.53 -55.94 -0.64 -18.80 15 19 H 0.14 1.60 8.14 -2.39 -0.02 1.58 15 20 H 0.06 1.20 8.13 -2.39 -0.02 1.18 15 21 H 0.05 1.19 8.13 -2.39 -0.02 1.17 15 22 H 0.17 3.47 8.06 -2.39 -0.02 3.45 15 23 H 0.14 3.37 8.14 -2.39 -0.02 3.36 15 24 H 0.18 6.98 8.06 -2.91 -0.02 6.96 15 25 H 0.28 14.19 8.30 -92.71 -0.77 13.42 15 26 H 0.19 11.20 5.77 -2.91 -0.02 11.19 15 Total: -1.00 -74.31 241.57 6.26 -68.05 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 1.19 Total: 16.25 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 4.84 Total: -8.87 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -1.60 Total: -85.63 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.20 Total: -32.78 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -74.31 6.26 -68.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214198171.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.795 kcal (2) G-P(sol) polarization free energy of solvation -74.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds