Wall clock time and date at job start Mon Mar 30 2020 02:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35717 * 117.00086 * 2 1 4 4 C 1.39440 * 120.75752 * 359.71671 * 3 2 1 5 5 N 1.31887 * 119.24614 * 179.75935 * 4 3 2 6 6 C 1.33524 * 120.89886 * 0.52893 * 5 4 3 7 7 C 1.41235 * 119.17217 * 179.70197 * 6 5 4 8 8 H 1.08001 * 119.99999 * 180.02562 * 7 6 5 9 9 C 1.40046 * 120.00206 * 0.02562 * 7 6 5 10 10 N 1.30713 * 120.00071 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99954 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47314 * 60.00194 * 11 9 7 13 13 H 1.48498 * 109.47394 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47215 * 300.00373 * 11 9 7 15 15 N 1.33587 * 121.65090 * 359.73075 * 6 5 4 16 16 C 1.32162 * 120.66673 * 359.97438 * 15 6 5 17 17 O 1.35557 * 120.47651 * 180.02562 * 16 15 6 18 18 C 1.42897 * 117.00143 * 359.97438 * 17 16 15 19 19 H 1.09001 * 109.47103 * 300.00404 * 1 2 3 20 20 H 1.09004 * 109.47054 * 59.99908 * 1 2 3 21 21 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 22 22 H 1.08004 * 120.37843 * 0.02562 * 4 3 2 23 23 H 0.96998 * 120.00184 * 179.97438 * 10 9 7 24 24 H 1.08999 * 109.47319 * 180.02562 * 18 17 16 25 25 H 1.09007 * 109.47246 * 299.99930 * 18 17 16 26 26 H 1.09004 * 109.47545 * 59.99557 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.3013 2.3886 -0.0059 5 7 1.9309 3.5475 -0.0009 6 6 3.2649 3.6032 -0.0009 7 6 3.9014 4.8640 -0.0018 8 1 4.9797 4.9246 -0.0022 9 6 3.1343 6.0357 -0.0023 10 7 1.8292 5.9624 -0.0023 11 14 3.9761 7.7032 -0.0028 12 1 4.8242 7.8292 -1.2154 13 1 2.9494 8.7761 -0.0039 14 1 4.8241 7.8300 1.2096 15 7 4.0127 2.4962 -0.0005 16 6 3.4480 1.3013 0.0003 17 8 4.2105 0.1805 0.0012 18 6 5.6282 0.3603 0.0006 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.2219 2.3535 -0.0102 23 1 1.2978 6.7739 -0.0022 24 1 6.1179 -0.6135 0.0010 25 1 5.9237 0.9149 -0.8901 26 1 5.9243 0.9167 0.8899 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214198565.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:04 Heat of formation + Delta-G solvation = -24.743556 kcal Electronic energy + Delta-G solvation = -13672.333861 eV Core-core repulsion = 11138.593264 eV Total energy + Delta-G solvation = -2533.740597 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.60965 -37.45530 -36.94724 -33.54753 -31.43661 -29.69320 -27.34803 -26.50234 -25.40369 -22.20957 -21.61987 -18.30620 -16.99994 -16.77486 -16.08352 -15.34781 -15.06267 -14.48964 -13.92265 -13.70683 -12.94779 -12.64046 -12.54516 -11.56101 -11.33376 -11.19862 -11.14838 -10.69769 -10.69620 -10.51403 -10.38456 -9.52802 -9.27267 -8.80234 -7.51012 -7.17185 -6.58847 -4.67512 2.54324 2.82303 3.04245 3.07031 3.11607 3.85417 3.97922 4.35488 4.60071 5.66222 5.67587 5.72096 5.80255 5.84629 5.87340 5.95765 5.98251 6.16884 6.29094 6.56078 7.00261 7.24726 7.89578 8.12257 8.28131 8.43443 8.59096 9.01328 10.04718 10.21009 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.037725 B = 0.010359 C = 0.008176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.040271 B = 2702.263819 C = 3423.856899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.318 6.318 3 C -0.149 4.149 4 C 0.117 3.883 5 N -0.497 5.497 6 C 0.401 3.599 7 C -0.400 4.400 8 H 0.093 0.907 9 C 0.067 3.933 10 N -0.712 5.712 11 Si 0.921 3.079 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.263 1.263 15 N -0.615 5.615 16 C 0.357 3.643 17 O -0.313 6.313 18 C 0.046 3.954 19 H 0.042 0.958 20 H 0.042 0.958 21 H 0.083 0.917 22 H 0.141 0.859 23 H 0.276 0.724 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -3.605 -0.007 3.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.231 6.231 3 C -0.202 4.202 4 C -0.056 4.056 5 N -0.218 5.218 6 C 0.164 3.836 7 C -0.436 4.436 8 H 0.111 0.889 9 C -0.160 4.160 10 N -0.335 5.335 11 Si 0.744 3.256 12 H -0.188 1.188 13 H -0.201 1.201 14 H -0.187 1.187 15 N -0.352 5.352 16 C 0.166 3.834 17 O -0.219 6.219 18 C -0.050 4.050 19 H 0.060 0.940 20 H 0.060 0.940 21 H 0.102 0.898 22 H 0.158 0.842 23 H 0.087 0.913 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.072 -3.037 -0.005 3.037 hybrid contribution -0.219 0.134 -0.001 0.256 sum -0.147 -2.903 -0.006 2.907 Atomic orbital electron populations 1.22730 0.81084 1.01966 1.00233 1.85889 1.18760 1.26552 1.91919 1.19418 0.89976 0.86358 1.24405 1.23095 0.99358 0.87397 0.95761 1.69287 1.09930 1.23383 1.19168 1.19580 0.84713 0.90209 0.89084 1.19176 0.94829 0.87285 1.42268 0.88933 1.26081 0.94844 1.01533 0.93542 1.70128 1.05505 1.30099 1.27721 0.86173 0.79666 0.79660 0.80088 1.18754 1.20103 1.18749 1.68435 1.40031 0.97076 1.29636 1.19314 0.85488 0.86016 0.92627 1.86190 1.18621 1.28521 1.88590 1.22632 0.79077 1.01158 1.02127 0.93969 0.93979 0.89807 0.84201 0.91251 0.90002 0.92933 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.84 101.05 0.99 1.57 15 2 O -0.32 -6.94 10.35 -31.34 -0.32 -7.26 15 3 C -0.15 -3.66 6.78 -38.25 -0.26 -3.92 15 4 C 0.12 2.87 10.30 -17.08 -0.18 2.69 15 5 N -0.50 -13.83 7.84 -12.60 -0.10 -13.93 15 6 C 0.40 11.39 7.36 -158.27 -1.16 10.23 15 7 C -0.40 -10.85 9.36 -37.77 -0.35 -11.21 15 8 H 0.09 2.39 7.85 -52.49 -0.41 1.98 15 9 C 0.07 1.67 5.50 -17.35 -0.10 1.58 15 10 N -0.71 -18.50 11.41 55.55 0.63 -17.87 15 11 Si 0.92 18.23 29.56 -169.99 -5.02 13.21 15 12 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 13 H -0.28 -5.28 7.11 56.52 0.40 -4.87 15 14 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 15 N -0.62 -16.64 9.29 -12.59 -0.12 -16.75 15 16 C 0.36 9.15 7.56 -16.53 -0.12 9.03 15 17 O -0.31 -7.16 10.34 -30.85 -0.32 -7.48 15 18 C 0.05 0.83 10.41 101.05 1.05 1.88 15 19 H 0.04 0.64 7.72 -51.93 -0.40 0.24 15 20 H 0.04 0.64 7.69 -51.93 -0.40 0.24 15 21 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.14 2.94 6.45 -52.48 -0.34 2.60 15 23 H 0.28 6.44 8.29 -40.82 -0.34 6.10 15 24 H 0.08 1.15 8.14 -51.93 -0.42 0.72 15 25 H 0.05 0.96 8.12 -51.92 -0.42 0.54 15 26 H 0.05 0.96 8.12 -51.93 -0.42 0.54 15 LS Contribution 237.71 15.07 3.58 3.58 Total: -1.00 -31.23 237.71 -4.17 -35.39 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -2.37 Total: -0.75 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -0.13 Total: 11.85 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.42 Total: -48.55 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.64 Total: -14.74 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.23 -4.17 -35.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214198565.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.650 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds