Wall clock time and date at job start Mon Mar 30 2020 02:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35717 * 117.00086 * 2 1 4 4 C 1.39440 * 120.75752 * 359.71671 * 3 2 1 5 5 N 1.31887 * 119.24614 * 179.75935 * 4 3 2 6 6 C 1.33524 * 120.89886 * 0.52893 * 5 4 3 7 7 C 1.41235 * 119.17217 * 179.70197 * 6 5 4 8 8 H 1.08001 * 119.99999 * 180.02562 * 7 6 5 9 9 C 1.40046 * 120.00206 * 0.02562 * 7 6 5 10 10 N 1.30713 * 120.00071 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99954 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47314 * 60.00194 * 11 9 7 13 13 H 1.48498 * 109.47394 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47215 * 300.00373 * 11 9 7 15 15 N 1.33587 * 121.65090 * 359.73075 * 6 5 4 16 16 C 1.32162 * 120.66673 * 359.97438 * 15 6 5 17 17 O 1.35557 * 120.47651 * 180.02562 * 16 15 6 18 18 C 1.42897 * 117.00143 * 359.97438 * 17 16 15 19 19 H 1.09001 * 109.47103 * 300.00404 * 1 2 3 20 20 H 1.09004 * 109.47054 * 59.99908 * 1 2 3 21 21 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 22 22 H 1.08004 * 120.37843 * 0.02562 * 4 3 2 23 23 H 0.96998 * 120.00184 * 179.97438 * 10 9 7 24 24 H 1.08999 * 109.47319 * 180.02562 * 18 17 16 25 25 H 1.09007 * 109.47246 * 299.99930 * 18 17 16 26 26 H 1.09004 * 109.47545 * 59.99557 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.3013 2.3886 -0.0059 5 7 1.9309 3.5475 -0.0009 6 6 3.2649 3.6032 -0.0009 7 6 3.9014 4.8640 -0.0018 8 1 4.9797 4.9246 -0.0022 9 6 3.1343 6.0357 -0.0023 10 7 1.8292 5.9624 -0.0023 11 14 3.9761 7.7032 -0.0028 12 1 4.8242 7.8292 -1.2154 13 1 2.9494 8.7761 -0.0039 14 1 4.8241 7.8300 1.2096 15 7 4.0127 2.4962 -0.0005 16 6 3.4480 1.3013 0.0003 17 8 4.2105 0.1805 0.0012 18 6 5.6282 0.3603 0.0006 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.2219 2.3535 -0.0102 23 1 1.2978 6.7739 -0.0022 24 1 6.1179 -0.6135 0.0010 25 1 5.9237 0.9149 -0.8901 26 1 5.9243 0.9167 0.8899 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214198565.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:03 Heat of formation + Delta-G solvation = -47.882740 kcal Electronic energy + Delta-G solvation = -13673.337251 eV Core-core repulsion = 11138.593264 eV Total energy + Delta-G solvation = -2534.743988 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.48332 -39.16592 -38.75148 -35.44247 -33.39737 -31.54788 -29.03889 -27.96844 -27.21448 -24.09053 -23.49064 -20.18218 -18.81217 -18.56946 -17.90853 -17.08272 -16.83635 -16.02943 -15.53976 -15.41188 -14.67131 -14.47945 -14.19754 -13.25586 -12.94685 -12.84841 -12.68937 -12.50531 -12.36872 -12.07743 -11.98664 -11.42429 -11.08118 -10.73262 -9.48786 -9.05709 -8.46201 -6.66577 0.63097 0.86458 1.43469 1.55417 1.57401 2.20081 2.27994 2.71806 2.76938 3.77393 3.81637 4.02915 4.29463 4.40373 4.46289 4.50545 4.54635 4.73456 4.77306 4.79522 5.10885 5.37812 6.07993 6.16291 6.40660 6.51174 6.69634 7.10020 8.07921 8.35637 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.037725 B = 0.010359 C = 0.008176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.040271 B = 2702.263819 C = 3423.856899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.331 6.331 3 C -0.146 4.146 4 C 0.110 3.890 5 N -0.526 5.526 6 C 0.370 3.630 7 C -0.431 4.431 8 H 0.093 0.907 9 C 0.025 3.975 10 N -0.744 5.744 11 Si 1.002 2.998 12 H -0.258 1.258 13 H -0.262 1.262 14 H -0.258 1.258 15 N -0.630 5.630 16 C 0.338 3.662 17 O -0.320 6.320 18 C 0.042 3.958 19 H 0.051 0.949 20 H 0.051 0.949 21 H 0.121 0.879 22 H 0.172 0.828 23 H 0.287 0.713 24 H 0.129 0.871 25 H 0.046 0.954 26 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -3.520 -0.009 3.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.245 6.245 3 C -0.199 4.199 4 C -0.062 4.062 5 N -0.247 5.247 6 C 0.133 3.867 7 C -0.467 4.467 8 H 0.111 0.889 9 C -0.199 4.199 10 N -0.367 5.367 11 Si 0.821 3.179 12 H -0.182 1.182 13 H -0.186 1.186 14 H -0.182 1.182 15 N -0.367 5.367 16 C 0.146 3.854 17 O -0.226 6.226 18 C -0.053 4.053 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.139 0.861 22 H 0.189 0.811 23 H 0.097 0.903 24 H 0.147 0.853 25 H 0.065 0.935 26 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.106 -3.005 -0.007 3.007 hybrid contribution -0.228 -0.080 -0.001 0.242 sum -0.334 -3.085 -0.007 3.103 Atomic orbital electron populations 1.23130 0.77934 1.04785 1.01087 1.85866 1.21949 1.25084 1.91643 1.19510 0.90083 0.87359 1.22923 1.23574 1.00770 0.86838 0.95017 1.69260 1.09935 1.24902 1.20622 1.20025 0.85465 0.91102 0.90147 1.19546 0.95243 0.88202 1.43695 0.88936 1.27051 0.95398 1.05080 0.92342 1.70183 1.07030 1.31906 1.27574 0.84964 0.78626 0.74114 0.80184 1.18237 1.18576 1.18229 1.68430 1.40413 0.97465 1.30414 1.19703 0.86692 0.86293 0.92672 1.86177 1.20684 1.27420 1.88313 1.22939 0.76909 1.03879 1.01545 0.93048 0.93043 0.86127 0.81141 0.90252 0.85290 0.93517 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 9.84 113.37 1.12 1.87 15 2 O -0.33 -14.01 10.35 -78.44 -0.81 -14.82 15 3 C -0.15 -7.15 6.78 23.13 0.16 -6.99 15 4 C 0.11 5.38 10.30 84.97 0.88 6.25 15 5 N -0.53 -29.73 7.84 -193.78 -1.52 -31.25 15 6 C 0.37 21.53 7.36 135.00 0.99 22.52 15 7 C -0.43 -23.89 9.36 23.45 0.22 -23.67 15 8 H 0.09 4.90 7.85 -2.91 -0.02 4.88 15 9 C 0.03 1.26 5.50 85.30 0.47 1.72 15 10 N -0.74 -38.82 11.41 21.84 0.25 -38.57 15 11 Si 1.00 36.92 29.56 68.60 2.03 38.95 15 12 H -0.26 -9.23 7.11 99.48 0.71 -8.53 15 13 H -0.26 -8.94 7.11 99.48 0.71 -8.23 15 14 H -0.26 -9.23 7.11 99.48 0.71 -8.52 15 15 N -0.63 -34.83 9.29 -306.73 -2.85 -37.68 15 16 C 0.34 17.45 7.56 85.22 0.64 18.10 15 17 O -0.32 -14.49 10.34 -76.69 -0.79 -15.28 15 18 C 0.04 1.49 10.41 113.37 1.18 2.67 15 19 H 0.05 1.43 7.72 -2.39 -0.02 1.41 15 20 H 0.05 1.43 7.69 -2.38 -0.02 1.41 15 21 H 0.12 2.66 8.14 -2.39 -0.02 2.64 15 22 H 0.17 6.98 6.45 -2.91 -0.02 6.96 15 23 H 0.29 13.25 8.29 -92.71 -0.77 12.48 15 24 H 0.13 3.28 8.14 -2.39 -0.02 3.26 15 25 H 0.05 1.69 8.12 -2.38 -0.02 1.67 15 26 H 0.05 1.69 8.12 -2.38 -0.02 1.67 15 Total: -1.00 -68.20 237.71 3.15 -65.05 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 1.20 Total: 11.11 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 5.65 Total: 22.48 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -4.12 Total: -107.50 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -1.60 Total: -30.10 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -68.20 3.15 -65.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214198565.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.167 kcal (2) G-P(sol) polarization free energy of solvation -68.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds