Wall clock time and date at job start Mon Mar 30 2020 02:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46962 * 2 1 4 4 F 1.39905 * 109.46752 * 240.00093 * 2 1 3 5 5 C 1.50693 * 109.47301 * 120.00083 * 2 1 3 6 6 C 1.36464 * 119.90780 * 95.01772 * 5 2 1 7 7 C 1.40813 * 119.81069 * 179.76475 * 6 5 2 8 8 C 1.41215 * 120.18029 * 180.23830 * 7 6 5 9 9 H 1.08001 * 119.99542 * 24.80018 * 8 7 6 10 10 C 1.39884 * 120.00180 * 204.79643 * 8 7 6 11 11 N 1.30881 * 120.00262 * 17.94322 * 10 8 7 12 12 Si 1.86804 * 120.00053 * 197.94398 * 10 8 7 13 13 H 1.48503 * 109.47167 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47263 * 120.00013 * 12 10 8 15 15 H 1.48501 * 109.47354 * 240.00012 * 12 10 8 16 16 C 1.40853 * 119.64322 * 0.48857 * 7 6 5 17 17 C 1.36419 * 119.80712 * 359.47459 * 16 7 6 18 18 C 1.39292 * 119.90979 * 275.00282 * 5 2 1 19 19 O 1.35675 * 119.81727 * 359.97079 * 18 5 2 20 20 H 1.09003 * 109.47118 * 299.99680 * 1 2 3 21 21 H 1.08997 * 109.47273 * 59.99967 * 1 2 3 22 22 H 1.09006 * 109.47334 * 180.02562 * 1 2 3 23 23 H 1.07994 * 120.09146 * 0.02906 * 6 5 2 24 24 H 0.97001 * 119.99997 * 179.97438 * 11 10 8 25 25 H 1.08000 * 120.09451 * 179.74063 * 16 7 6 26 26 H 1.08005 * 119.90220 * 180.27487 * 17 16 7 27 27 H 0.96700 * 114.00204 * 270.02956 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0324 -0.7104 1.2304 6 6 2.3567 -2.0344 1.1669 7 6 2.8307 -2.6950 2.3166 8 6 3.1734 -4.0637 2.2584 9 1 3.4616 -4.5086 1.3174 10 6 3.1396 -4.8431 3.4195 11 7 2.4730 -4.4287 4.4668 12 14 4.0460 -6.4756 3.4752 13 1 4.7180 -6.7134 2.1724 14 1 5.0629 -6.4405 4.5569 15 1 3.0784 -7.5703 3.7408 16 6 2.9560 -1.9845 3.5263 17 6 2.6282 -0.6611 3.5726 18 6 2.1646 -0.0137 2.4293 19 8 1.8408 1.3027 2.4838 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 2.2543 -2.5729 0.2364 24 1 2.4493 -4.9694 5.2718 25 1 3.3148 -2.4850 4.4136 26 1 2.7280 -0.1138 4.4984 27 1 2.5767 1.8974 2.2839 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214200151.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:11 Heat of formation + Delta-G solvation = -107.566673 kcal Electronic energy + Delta-G solvation = -13547.676961 eV Core-core repulsion = 10990.424923 eV Total energy + Delta-G solvation = -2557.252039 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.60387 -40.19448 -37.52894 -35.35736 -33.74370 -31.28705 -29.99786 -26.79591 -24.63648 -22.80131 -21.80702 -19.15778 -18.99325 -17.42783 -17.06071 -16.39975 -16.15882 -15.87328 -15.36213 -15.03014 -14.43406 -13.70127 -13.58683 -13.39716 -13.15508 -12.93515 -12.88189 -12.56765 -12.18683 -12.12916 -11.89330 -11.51372 -11.06147 -10.80152 -9.51488 -9.19333 -8.71159 -6.37954 0.76352 0.94153 1.37853 1.45515 1.53648 2.18896 2.59127 3.50140 3.71364 3.75761 3.83777 4.11826 4.23998 4.39530 4.76954 4.93168 4.95472 5.06214 5.18638 5.20394 5.35292 5.57630 5.73895 5.98490 5.99948 6.19849 6.54147 6.82285 6.85063 7.24809 8.26530 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.041634 B = 0.009488 C = 0.008215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.367841 B = 2950.527682 C = 3407.630362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.108 0.892 4 F -0.226 7.226 5 C -0.116 4.116 6 C -0.217 4.217 7 C 0.077 3.923 8 C -0.494 4.494 9 H 0.076 0.924 10 C 0.036 3.964 11 N -0.821 5.821 12 Si 0.985 3.015 13 H -0.259 1.259 14 H -0.261 1.261 15 H -0.264 1.264 16 C -0.173 4.173 17 C -0.123 4.123 18 C -0.018 4.018 19 O -0.497 6.497 20 H 0.077 0.923 21 H 0.089 0.911 22 H 0.049 0.951 23 H 0.095 0.905 24 H 0.291 0.709 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 5.121 -2.992 5.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.103 3.897 3 H 0.126 0.874 4 F -0.207 7.207 5 C -0.116 4.116 6 C -0.237 4.237 7 C 0.075 3.925 8 C -0.523 4.523 9 H 0.094 0.906 10 C -0.179 4.179 11 N -0.447 5.447 12 Si 0.806 3.194 13 H -0.182 1.182 14 H -0.186 1.186 15 H -0.189 1.189 16 C -0.193 4.193 17 C -0.142 4.142 18 C -0.063 4.063 19 O -0.307 6.307 20 H 0.096 0.904 21 H 0.108 0.892 22 H 0.068 0.932 23 H 0.113 0.887 24 H 0.102 0.898 25 H 0.127 0.873 26 H 0.134 0.866 27 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.458 4.828 -2.640 5.522 hybrid contribution 0.781 -0.717 0.115 1.066 sum 0.323 4.112 -2.526 4.836 Atomic orbital electron populations 1.22226 0.92510 1.02871 1.04164 1.20324 0.95755 0.95246 0.78370 0.87442 1.92744 1.90681 1.84132 1.53167 1.20043 1.01864 0.94883 0.94860 1.20566 1.09488 0.94899 0.98751 1.17977 0.88891 0.93890 0.91740 1.19846 1.41801 0.94583 0.96096 0.90610 1.26798 0.93306 1.03918 0.93915 1.69886 1.30544 1.39767 1.04501 0.85112 0.78649 0.76001 0.79680 1.18248 1.18561 1.18915 1.20991 1.05986 0.93340 0.98972 1.20959 1.00209 0.95302 0.97683 1.17662 1.12121 0.84297 0.92251 1.84748 1.39731 1.13446 1.92771 0.90353 0.89187 0.93155 0.88651 0.89808 0.87343 0.86576 0.76239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 9.63 71.98 0.69 -4.30 15 2 C 0.14 4.95 3.90 29.85 0.12 5.07 15 3 H 0.11 3.20 7.68 -2.39 -0.02 3.19 15 4 F -0.23 -8.78 16.06 44.97 0.72 -8.06 15 5 C -0.12 -5.12 5.06 -20.03 -0.10 -5.22 15 6 C -0.22 -11.06 9.09 22.49 0.20 -10.86 15 7 C 0.08 4.24 5.57 -21.28 -0.12 4.12 15 8 C -0.49 -26.94 9.04 23.40 0.21 -26.73 15 9 H 0.08 4.03 7.91 -2.91 -0.02 4.00 15 10 C 0.04 1.81 5.13 85.23 0.44 2.25 15 11 N -0.82 -42.66 10.96 21.82 0.24 -42.43 15 12 Si 0.99 37.87 29.60 68.60 2.03 39.90 15 13 H -0.26 -9.82 7.11 99.48 0.71 -9.12 15 14 H -0.26 -9.54 7.11 99.48 0.71 -8.84 15 15 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 16 C -0.17 -9.13 8.64 22.49 0.19 -8.94 15 17 C -0.12 -5.72 9.92 22.11 0.22 -5.50 15 18 C -0.02 -0.78 6.70 22.79 0.15 -0.63 15 19 O -0.50 -17.27 12.60 -89.92 -1.13 -18.41 15 20 H 0.08 2.42 8.14 -2.39 -0.02 2.40 15 21 H 0.09 2.21 8.14 -2.39 -0.02 2.19 15 22 H 0.05 1.70 8.14 -2.38 -0.02 1.68 15 23 H 0.10 4.84 7.44 -2.91 -0.02 4.82 15 24 H 0.29 13.51 8.30 -92.71 -0.77 12.74 15 25 H 0.11 5.91 6.16 -2.91 -0.02 5.89 15 26 H 0.12 4.82 8.06 -2.91 -0.02 4.80 15 27 H 0.38 9.41 9.06 -74.06 -0.67 8.74 15 Total: -1.00 -60.61 242.27 4.39 -56.22 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.52 Total: 23.50 kcal Atomic # 6 Polarization: -52.74 SS G_CDS: 2.01 Total: -50.73 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.24 Total: -42.43 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -1.13 Total: -18.41 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 0.72 Total: -8.06 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -60.61 4.39 -56.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214200151.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.343 kcal (2) G-P(sol) polarization free energy of solvation -60.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds