Wall clock time and date at job start Mon Mar 30 2020 02:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47636 * 2 1 4 4 F 1.39906 * 109.47159 * 120.00256 * 2 1 3 5 5 C 1.50700 * 109.47282 * 240.00025 * 2 1 3 6 6 C 1.36452 * 119.90976 * 95.00256 * 5 2 1 7 7 C 1.40812 * 119.81333 * 180.28133 * 6 5 2 8 8 C 1.41215 * 120.17709 * 179.70404 * 7 6 5 9 9 H 1.07999 * 120.00597 * 24.44428 * 8 7 6 10 10 C 1.39892 * 119.99718 * 204.44443 * 8 7 6 11 11 N 1.30884 * 119.99919 * 17.81332 * 10 8 7 12 12 Si 1.86797 * 119.99893 * 197.81463 * 10 8 7 13 13 H 1.48505 * 109.47251 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47287 * 120.00327 * 12 10 8 15 15 H 1.48503 * 109.47188 * 240.00042 * 12 10 8 16 16 C 1.40852 * 119.63966 * 359.46531 * 7 6 5 17 17 C 1.36413 * 119.81261 * 0.53598 * 16 7 6 18 18 C 1.39291 * 119.90805 * 275.02260 * 5 2 1 19 19 O 1.35680 * 119.81802 * 359.97438 * 18 5 2 20 20 H 1.08996 * 109.47420 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46963 * 300.00285 * 1 2 3 22 22 H 1.09004 * 109.46769 * 59.99901 * 1 2 3 23 23 H 1.08002 * 120.08944 * 0.02562 * 6 5 2 24 24 H 0.97006 * 119.99699 * 179.97438 * 11 10 8 25 25 H 1.08006 * 120.09143 * 180.23422 * 16 7 6 26 26 H 1.08003 * 119.90671 * 179.72210 * 17 16 7 27 27 H 0.96700 * 114.00339 * 89.99350 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6596 1.1423 5 6 2.0323 -0.7104 -1.2305 6 6 2.3564 0.0065 -2.3454 7 6 2.8200 -0.6599 -3.4959 8 6 3.1516 0.0738 -4.6560 9 1 3.4345 1.1130 -4.5754 10 6 3.1136 -0.5454 -5.9099 11 7 2.4542 -1.6650 -6.0671 12 14 4.0039 0.2258 -7.3597 13 1 4.6685 1.4797 -6.9224 14 1 5.0242 -0.7222 -7.8751 15 1 3.0262 0.5331 -8.4344 16 6 2.9559 -2.0618 -3.4817 17 6 2.6276 -2.7636 -2.3590 18 6 2.1642 -2.0970 -1.2267 19 8 1.8400 -2.8025 -0.1140 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 2.2537 1.0816 -2.3466 24 1 2.4275 -2.0941 -6.9367 25 1 3.3144 -2.5800 -4.3589 26 1 2.7270 -3.8390 -2.3479 27 1 0.9161 -3.0867 -0.0837 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214200205.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:12 Heat of formation + Delta-G solvation = -105.947837 kcal Electronic energy + Delta-G solvation = -13590.763780 eV Core-core repulsion = 11033.581939 eV Total energy + Delta-G solvation = -2557.181841 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.42284 -40.12885 -37.48683 -35.40688 -33.78696 -31.24408 -29.94783 -26.76917 -24.50035 -22.85325 -21.87403 -19.16350 -18.82907 -17.35481 -17.09018 -16.36657 -16.04327 -15.73577 -15.39179 -14.97689 -14.35406 -13.79541 -13.54881 -13.25335 -13.14587 -12.89614 -12.81380 -12.66414 -12.15902 -11.97643 -11.84027 -11.61079 -11.04410 -10.70825 -9.51629 -9.17640 -8.69108 -6.36173 0.77947 0.94613 1.39639 1.47053 1.54988 2.19564 2.60287 3.53820 3.68356 3.87511 3.88305 4.09164 4.29001 4.42127 4.80883 4.91964 4.92948 5.07294 5.19006 5.24113 5.39611 5.57399 5.69501 6.00237 6.02794 6.19335 6.54995 6.83753 6.86248 7.26340 8.27828 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.053447 B = 0.008709 C = 0.007985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.754902 B = 3214.205268 C = 3505.927067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 H 0.096 0.904 4 F -0.218 7.218 5 C -0.117 4.117 6 C -0.214 4.214 7 C 0.077 3.923 8 C -0.490 4.490 9 H 0.082 0.918 10 C 0.035 3.965 11 N -0.822 5.822 12 Si 0.984 3.016 13 H -0.257 1.257 14 H -0.266 1.266 15 H -0.265 1.265 16 C -0.173 4.173 17 C -0.128 4.128 18 C -0.023 4.023 19 O -0.496 6.496 20 H 0.061 0.939 21 H 0.088 0.912 22 H 0.077 0.923 23 H 0.113 0.887 24 H 0.290 0.710 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 2.478 3.473 5.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.100 3.900 3 H 0.113 0.887 4 F -0.199 7.199 5 C -0.118 4.118 6 C -0.233 4.233 7 C 0.075 3.925 8 C -0.519 4.519 9 H 0.100 0.900 10 C -0.180 4.180 11 N -0.447 5.447 12 Si 0.805 3.195 13 H -0.180 1.180 14 H -0.191 1.191 15 H -0.189 1.189 16 C -0.192 4.192 17 C -0.146 4.146 18 C -0.068 4.068 19 O -0.304 6.304 20 H 0.080 0.920 21 H 0.106 0.894 22 H 0.096 0.904 23 H 0.131 0.869 24 H 0.101 0.899 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.438 2.384 3.481 4.873 hybrid contribution -0.122 -0.196 -0.883 0.913 sum -2.560 2.188 2.598 4.254 Atomic orbital electron populations 1.22241 0.91979 1.03541 1.04084 1.20394 0.96106 0.94762 0.78775 0.88660 1.92792 1.90636 1.83849 1.52583 1.20154 1.01974 0.93658 0.95976 1.20653 1.09472 0.98815 0.94404 1.17966 0.88976 0.92563 0.93015 1.19861 1.41659 0.98865 0.91523 0.89991 1.26799 0.93246 0.94830 1.03169 1.69891 1.30705 1.17249 1.26877 0.85121 0.78613 0.79354 0.76431 1.17995 1.19063 1.18926 1.20978 1.06069 0.95045 0.97158 1.20956 1.01705 0.98976 0.93000 1.17923 1.12097 0.89165 0.87623 1.84824 1.32321 1.73589 1.39685 0.91994 0.89365 0.90437 0.86936 0.89905 0.87485 0.87313 0.77257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 9.63 71.98 0.69 -3.81 15 2 C 0.14 4.79 4.04 29.85 0.12 4.91 15 3 H 0.10 3.00 8.04 -2.39 -0.02 2.98 15 4 F -0.22 -8.46 15.31 44.97 0.69 -7.78 15 5 C -0.12 -5.13 5.01 -20.03 -0.10 -5.23 15 6 C -0.21 -10.17 9.35 22.48 0.21 -9.96 15 7 C 0.08 4.10 5.57 -21.28 -0.12 3.98 15 8 C -0.49 -25.60 9.04 23.40 0.21 -25.39 15 9 H 0.08 4.09 7.91 -2.91 -0.02 4.06 15 10 C 0.04 1.71 5.13 85.23 0.44 2.15 15 11 N -0.82 -41.80 10.96 21.82 0.24 -41.56 15 12 Si 0.98 36.85 29.59 68.60 2.03 38.88 15 13 H -0.26 -9.38 7.11 99.48 0.71 -8.68 15 14 H -0.27 -9.66 7.11 99.48 0.71 -8.95 15 15 H -0.26 -9.44 7.11 99.48 0.71 -8.73 15 16 C -0.17 -9.14 8.64 22.48 0.19 -8.94 15 17 C -0.13 -6.18 9.92 22.11 0.22 -5.96 15 18 C -0.02 -1.06 6.61 22.79 0.15 -0.91 15 19 O -0.50 -20.11 11.59 -89.98 -1.04 -21.15 15 20 H 0.06 1.73 8.14 -2.39 -0.02 1.71 15 21 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 22 H 0.08 2.11 8.14 -2.38 -0.02 2.09 15 23 H 0.11 4.87 8.05 -2.91 -0.02 4.85 15 24 H 0.29 13.25 8.30 -92.70 -0.77 12.48 15 25 H 0.11 5.86 6.17 -2.91 -0.02 5.84 15 26 H 0.11 4.81 8.06 -2.91 -0.02 4.79 15 27 H 0.37 11.73 9.06 -74.06 -0.67 11.06 15 Total: -1.00 -59.75 241.74 4.45 -55.30 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.52 Total: 25.45 kcal Atomic # 6 Polarization: -51.17 SS G_CDS: 2.02 Total: -49.15 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.24 Total: -41.56 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -1.04 Total: -21.15 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 0.69 Total: -7.78 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Total: -59.75 4.45 -55.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214200205.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.645 kcal (2) G-P(sol) polarization free energy of solvation -59.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds