Wall clock time and date at job start Mon Mar 30 2020 02:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00079 * 2 1 4 4 C 1.39167 * 119.93305 * 359.72310 * 3 2 1 5 5 C 1.38518 * 120.44671 * 180.27718 * 4 3 2 6 6 C 1.37671 * 120.30499 * 0.02562 * 5 4 3 7 7 C 1.40734 * 119.85326 * 359.97438 * 6 5 4 8 8 C 1.41403 * 120.21882 * 179.97438 * 7 6 5 9 9 H 1.07993 * 120.00205 * 205.46042 * 8 7 6 10 10 C 1.39935 * 119.99505 * 25.45241 * 8 7 6 11 11 N 1.30826 * 120.00253 * 15.31165 * 10 8 7 12 12 Si 1.86798 * 119.99924 * 195.30302 * 10 8 7 13 13 H 1.48502 * 109.46896 * 60.00606 * 12 10 8 14 14 H 1.48506 * 109.47334 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47325 * 300.00815 * 12 10 8 16 16 C 1.38093 * 119.93387 * 180.02562 * 3 2 1 17 17 C 1.50695 * 120.15262 * 359.69972 * 16 3 2 18 18 F 1.39901 * 109.47162 * 90.00429 * 17 16 3 19 19 H 1.09003 * 109.47414 * 300.00249 * 1 2 3 20 20 H 1.09002 * 109.47310 * 60.00087 * 1 2 3 21 21 H 1.08997 * 109.47001 * 180.02562 * 1 2 3 22 22 H 1.08007 * 119.77449 * 0.25651 * 4 3 2 23 23 H 1.07995 * 119.84554 * 179.97438 * 5 4 3 24 24 H 1.07995 * 120.07018 * 179.97438 * 6 5 4 25 25 H 0.97001 * 120.00715 * 179.97438 * 11 10 8 26 26 H 1.09006 * 109.47185 * 210.00442 * 17 16 3 27 27 H 1.09002 * 109.46966 * 330.00070 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2867 2.3772 -0.0058 5 6 1.9045 3.6169 -0.0117 6 6 3.2781 3.7086 -0.0123 7 6 4.0584 2.5373 -0.0064 8 6 5.4698 2.6225 -0.0076 9 1 6.0595 1.8100 -0.4056 10 6 6.1025 3.7597 0.5069 11 7 5.4319 4.6010 1.2512 12 14 7.9047 4.0763 0.1312 13 1 8.0906 4.1958 -1.3373 14 1 8.3336 5.3367 0.7891 15 1 8.7228 2.9478 0.6434 16 6 3.4251 1.2816 -0.0005 17 6 4.2477 0.0190 0.0057 18 9 4.5022 -0.3783 -1.3113 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 0.2084 2.3152 -0.0061 23 1 1.3058 4.5157 -0.0166 24 1 3.7558 4.6771 -0.0173 25 1 5.8705 5.3892 1.6081 26 1 5.1918 0.2029 0.5186 27 1 3.7004 -0.7687 0.5236 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214200283.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:11 Heat of formation + Delta-G solvation = -97.022369 kcal Electronic energy + Delta-G solvation = -13684.593416 eV Core-core repulsion = 11127.798613 eV Total energy + Delta-G solvation = -2556.794803 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.30995 -40.56232 -38.18283 -35.32342 -32.92074 -30.85983 -28.09978 -27.67704 -26.26619 -22.61257 -21.83972 -19.55794 -17.84629 -17.31100 -16.87498 -16.73728 -16.49672 -16.15332 -15.81687 -15.09405 -14.71055 -14.27734 -13.69904 -13.34841 -12.89380 -12.83491 -12.59829 -12.45646 -12.18672 -12.02190 -11.66105 -11.45627 -11.03840 -10.98869 -9.46175 -8.82017 -8.66546 -6.46455 0.85382 1.07324 1.39551 1.50500 1.54971 2.19378 2.65294 2.70050 3.60169 4.17445 4.18967 4.25787 4.40434 4.46834 4.54232 4.69204 4.81924 5.01475 5.05026 5.13061 5.26866 5.54252 5.77802 5.89525 6.05026 6.13247 6.50646 6.75092 6.86903 6.99442 8.26965 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.039160 B = 0.011060 C = 0.008967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.845767 B = 2531.108735 C = 3121.759193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.342 6.342 3 C 0.160 3.840 4 C -0.324 4.324 5 C -0.071 4.071 6 C -0.217 4.217 7 C 0.124 3.876 8 C -0.486 4.486 9 H 0.079 0.921 10 C 0.040 3.960 11 N -0.814 5.814 12 Si 0.983 3.017 13 H -0.262 1.262 14 H -0.264 1.264 15 H -0.257 1.257 16 C -0.306 4.306 17 C 0.139 3.861 18 F -0.238 7.238 19 H 0.056 0.944 20 H 0.054 0.946 21 H 0.120 0.880 22 H 0.129 0.871 23 H 0.119 0.881 24 H 0.109 0.891 25 H 0.292 0.708 26 H 0.075 0.925 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.457 -3.044 -0.176 4.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.257 6.257 3 C 0.115 3.885 4 C -0.344 4.344 5 C -0.090 4.090 6 C -0.237 4.237 7 C 0.122 3.878 8 C -0.514 4.514 9 H 0.097 0.903 10 C -0.177 4.177 11 N -0.439 5.439 12 Si 0.803 3.197 13 H -0.187 1.187 14 H -0.188 1.188 15 H -0.182 1.182 16 C -0.309 4.309 17 C 0.085 3.915 18 F -0.220 7.220 19 H 0.075 0.925 20 H 0.073 0.927 21 H 0.138 0.862 22 H 0.147 0.853 23 H 0.137 0.863 24 H 0.127 0.873 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.360 -3.034 -0.049 4.528 hybrid contribution 0.372 0.520 -0.087 0.646 sum -2.988 -2.514 -0.136 3.908 Atomic orbital electron populations 1.23188 0.77339 1.04800 1.01594 1.85941 1.22945 1.27616 1.89162 1.18676 0.91297 0.84096 0.94435 1.20775 0.98923 0.91833 1.22859 1.20834 0.94434 0.96722 0.96964 1.21328 0.93169 0.98501 1.10668 1.17602 0.93946 0.90212 0.86071 1.19814 0.91777 1.03437 1.36403 0.90317 1.26778 1.05389 0.93951 0.91600 1.69856 1.40555 1.10920 1.22526 0.85230 0.75867 0.78886 0.79671 1.18673 1.18801 1.18155 1.19674 0.91066 0.95594 1.24549 1.20264 0.99416 0.93862 0.77970 1.92672 1.95825 1.92212 1.41245 0.92494 0.92691 0.86167 0.85336 0.86294 0.87295 0.89732 0.90676 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.81 113.37 1.11 1.82 15 2 O -0.34 -13.80 9.53 -92.46 -0.88 -14.68 15 3 C 0.16 7.48 6.65 22.46 0.15 7.63 15 4 C -0.32 -14.27 9.05 22.56 0.20 -14.06 15 5 C -0.07 -3.31 10.02 22.20 0.22 -3.08 15 6 C -0.22 -11.52 8.69 22.75 0.20 -11.32 15 7 C 0.12 6.83 5.57 -21.30 -0.12 6.71 15 8 C -0.49 -26.08 8.14 23.46 0.19 -25.89 15 9 H 0.08 4.13 6.85 -2.91 -0.02 4.11 15 10 C 0.04 1.95 5.19 85.25 0.44 2.40 15 11 N -0.81 -41.47 10.87 21.82 0.24 -41.23 15 12 Si 0.98 37.55 29.59 68.60 2.03 39.58 15 13 H -0.26 -9.96 7.11 99.48 0.71 -9.26 15 14 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 15 H -0.26 -9.51 7.11 99.48 0.71 -8.81 15 16 C -0.31 -15.70 5.67 -19.31 -0.11 -15.81 15 17 C 0.14 6.37 6.84 71.23 0.49 6.86 15 18 F -0.24 -11.34 17.34 44.97 0.78 -10.56 15 19 H 0.06 1.49 7.66 -2.39 -0.02 1.47 15 20 H 0.05 1.46 7.65 -2.39 -0.02 1.44 15 21 H 0.12 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.13 4.70 6.27 -2.91 -0.02 4.68 15 23 H 0.12 4.74 8.06 -2.91 -0.02 4.72 15 24 H 0.11 5.94 6.13 -2.91 -0.02 5.93 15 25 H 0.29 13.35 8.30 -92.71 -0.77 12.58 15 26 H 0.08 3.37 6.77 -2.38 -0.02 3.35 15 27 H 0.08 3.19 7.53 -2.39 -0.02 3.17 15 Total: -1.00 -60.58 237.61 6.13 -54.45 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 1.18 Total: 17.18 kcal Atomic # 6 Polarization: -47.52 SS G_CDS: 2.78 Total: -44.75 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.24 Total: -41.23 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.88 Total: -14.68 kcal Atomic # 9 Polarization: -11.34 SS G_CDS: 0.78 Total: -10.56 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -60.58 6.13 -54.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214200283.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.569 kcal (2) G-P(sol) polarization free energy of solvation -60.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds