Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46679 * 2 1 4 4 F 1.39899 * 109.47162 * 240.00498 * 2 1 3 5 5 C 1.50695 * 109.47252 * 120.00136 * 2 1 3 6 6 C 1.38819 * 119.72952 * 65.00465 * 5 2 1 7 7 C 1.38311 * 120.58899 * 180.02562 * 6 5 2 8 8 C 1.38442 * 120.05402 * 359.97438 * 7 6 5 9 9 O 1.35639 * 120.26642 * 180.02562 * 8 7 6 10 10 C 1.41317 * 119.46786 * 0.27764 * 8 7 6 11 11 C 1.41158 * 120.29373 * 179.70011 * 10 8 7 12 12 H 1.08001 * 119.99225 * 331.46235 * 11 10 8 13 13 C 1.39926 * 120.00394 * 151.45841 * 11 10 8 14 14 N 1.30863 * 120.00001 * 159.39680 * 13 11 10 15 15 Si 1.86799 * 119.99987 * 339.39623 * 13 11 10 16 16 H 1.48497 * 109.47435 * 95.04057 * 15 13 11 17 17 H 1.48503 * 109.47161 * 215.03844 * 15 13 11 18 18 H 1.48506 * 109.47195 * 335.03749 * 15 13 11 19 19 C 1.36492 * 119.73331 * 244.98204 * 5 2 1 20 20 H 1.08993 * 109.47366 * 299.99455 * 1 2 3 21 21 H 1.09002 * 109.47121 * 60.00098 * 1 2 3 22 22 H 1.09006 * 109.46721 * 179.97438 * 1 2 3 23 23 H 1.07994 * 119.70285 * 0.02562 * 6 5 2 24 24 H 1.07994 * 119.97032 * 179.97438 * 7 6 5 25 25 H 0.96703 * 114.00212 * 85.16622 * 9 8 7 26 26 H 0.97008 * 119.99944 * 180.02562 * 14 13 11 27 27 H 1.08003 * 120.03231 * 0.02681 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0324 -0.7104 1.2304 6 6 1.7816 -2.0660 1.3932 7 6 2.2339 -2.7356 2.5157 8 6 2.9442 -2.0550 3.4898 9 8 3.3902 -2.7075 4.5922 10 6 3.1961 -0.6738 3.3291 11 6 3.9131 0.0387 4.3144 12 1 3.8786 -0.2824 5.3450 13 6 4.6684 1.1607 3.9560 14 7 4.9958 2.0459 4.8625 15 14 5.2095 1.3950 2.1835 16 1 4.2354 2.2674 1.4797 17 1 6.5521 2.0289 2.1554 18 1 5.2711 0.0749 1.5061 19 6 2.7306 -0.0159 2.1754 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.2285 -2.6025 0.6366 24 1 2.0328 -3.7902 2.6324 25 1 4.2418 -3.1491 4.4702 26 1 5.5191 2.8240 4.6139 27 1 2.9210 1.0386 2.0405 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214200442.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = -88.399633 kcal Electronic energy + Delta-G solvation = -13673.931283 eV Core-core repulsion = 11117.510390 eV Total energy + Delta-G solvation = -2556.420894 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.16431 -38.49746 -35.76415 -33.88274 -31.95581 -30.49678 -28.08791 -25.12545 -22.93805 -21.75795 -19.78978 -17.48507 -17.17888 -16.06169 -15.57976 -14.76669 -14.60279 -14.28566 -14.07648 -13.31279 -12.82711 -12.50252 -12.18077 -12.05851 -11.72761 -11.56801 -11.16191 -10.85659 -10.61852 -10.33793 -10.23420 -9.72139 -9.55118 -8.97522 -7.80634 -7.54954 -7.06969 -4.54668 2.29813 2.53296 3.01512 3.12127 3.24155 3.87865 4.28703 5.03127 5.10261 5.12405 5.34768 5.51800 5.61403 5.91170 5.95392 6.25166 6.26919 6.38175 6.49708 6.80403 7.05389 7.14528 7.40150 7.51490 7.70799 7.92417 8.24156 8.39087 8.67732 8.95678 9.94501 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.026553 B = 0.014578 C = 0.010601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.260017 B = 1920.175869 C = 2640.525411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 H 0.079 0.921 4 F -0.217 7.217 5 C -0.089 4.089 6 C -0.213 4.213 7 C -0.104 4.104 8 C -0.004 4.004 9 O -0.492 6.492 10 C 0.074 3.926 11 C -0.432 4.432 12 H 0.098 0.902 13 C 0.084 3.916 14 N -0.797 5.797 15 Si 0.907 3.093 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.244 1.244 19 C -0.212 4.212 20 H 0.075 0.925 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.361 0.639 26 H 0.287 0.713 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 -2.051 -6.890 7.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.094 3.906 3 H 0.097 0.903 4 F -0.198 7.198 5 C -0.089 4.089 6 C -0.232 4.232 7 C -0.123 4.123 8 C -0.049 4.049 9 O -0.299 6.299 10 C 0.070 3.930 11 C -0.459 4.459 12 H 0.116 0.884 13 C -0.136 4.136 14 N -0.420 5.420 15 Si 0.732 3.268 16 H -0.195 1.195 17 H -0.214 1.214 18 H -0.167 1.167 19 C -0.231 4.231 20 H 0.094 0.906 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.117 0.883 24 H 0.120 0.880 25 H 0.214 0.786 26 H 0.098 0.902 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.406 -1.614 -6.513 7.525 hybrid contribution 0.790 0.069 -0.887 1.190 sum -2.616 -1.545 -7.400 7.999 Atomic orbital electron populations 1.22317 0.94189 1.03467 1.02673 1.20410 0.94513 0.95058 0.80624 0.90283 1.92779 1.90463 1.83702 1.52817 1.19379 0.99849 0.94747 0.94949 1.19973 1.10137 0.93736 0.99376 1.20921 0.99238 0.98320 0.93827 1.18433 1.06261 0.90374 0.89846 1.84751 1.39816 1.70457 1.34899 1.17891 0.92202 0.91194 0.91668 1.19426 1.23324 1.06307 0.96864 0.88394 1.26231 0.94111 0.93362 0.99943 1.69730 1.27799 1.07695 1.36773 0.86395 0.77369 0.80826 0.82161 1.19457 1.21422 1.16716 1.20544 1.05979 0.98542 0.98079 0.90600 0.92146 0.91359 0.88312 0.88002 0.78627 0.90241 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 9.51 37.16 0.35 -2.14 15 2 C 0.13 2.37 4.16 -27.88 -0.12 2.25 15 3 H 0.08 1.36 7.85 -51.92 -0.41 0.96 15 4 F -0.22 -4.14 16.93 2.25 0.04 -4.10 15 5 C -0.09 -1.91 5.01 -105.04 -0.53 -2.44 15 6 C -0.21 -4.47 9.13 -39.34 -0.36 -4.83 15 7 C -0.10 -2.24 9.98 -39.48 -0.39 -2.64 15 8 C 0.00 -0.09 6.74 -38.34 -0.26 -0.35 15 9 O -0.49 -10.92 12.84 -18.62 -0.24 -11.16 15 10 C 0.07 1.89 5.13 -106.68 -0.55 1.34 15 11 C -0.43 -11.66 9.19 -37.84 -0.35 -12.01 15 12 H 0.10 2.84 7.88 -52.49 -0.41 2.43 15 13 C 0.08 2.16 5.38 -17.33 -0.09 2.07 15 14 N -0.80 -20.85 13.93 55.55 0.77 -20.08 15 15 Si 0.91 20.38 24.56 -169.99 -4.18 16.20 15 16 H -0.27 -5.79 6.65 56.52 0.38 -5.42 15 17 H -0.29 -6.18 7.11 56.52 0.40 -5.78 15 18 H -0.24 -5.68 6.97 56.52 0.39 -5.29 15 19 C -0.21 -5.05 6.83 -39.27 -0.27 -5.32 15 20 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.07 0.99 7.67 -51.93 -0.40 0.59 15 23 H 0.10 1.87 7.86 -52.49 -0.41 1.46 15 24 H 0.10 1.92 8.06 -52.49 -0.42 1.50 15 25 H 0.36 6.34 9.06 45.56 0.41 6.75 15 26 H 0.29 6.76 8.30 -40.82 -0.34 6.42 15 27 H 0.11 2.46 4.54 -52.48 -0.24 2.22 15 LS Contribution 237.54 15.07 3.58 3.58 Total: -1.00 -28.34 237.54 -4.47 -32.81 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -1.89 Total: 6.81 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -2.56 Total: -24.07 kcal Atomic # 7 Polarization: -20.85 SS G_CDS: 0.77 Total: -20.08 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.24 Total: -11.16 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.10 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.18 Total: 16.20 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.34 -4.47 -32.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214200442.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.588 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds