Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46679 * 2 1 4 4 F 1.39899 * 109.47162 * 240.00498 * 2 1 3 5 5 C 1.50695 * 109.47252 * 120.00136 * 2 1 3 6 6 C 1.38819 * 119.72952 * 65.00465 * 5 2 1 7 7 C 1.38311 * 120.58899 * 180.02562 * 6 5 2 8 8 C 1.38442 * 120.05402 * 359.97438 * 7 6 5 9 9 O 1.35639 * 120.26642 * 180.02562 * 8 7 6 10 10 C 1.41317 * 119.46786 * 0.27764 * 8 7 6 11 11 C 1.41158 * 120.29373 * 179.70011 * 10 8 7 12 12 H 1.08001 * 119.99225 * 331.46235 * 11 10 8 13 13 C 1.39926 * 120.00394 * 151.45841 * 11 10 8 14 14 N 1.30863 * 120.00001 * 159.39680 * 13 11 10 15 15 Si 1.86799 * 119.99987 * 339.39623 * 13 11 10 16 16 H 1.48497 * 109.47435 * 95.04057 * 15 13 11 17 17 H 1.48503 * 109.47161 * 215.03844 * 15 13 11 18 18 H 1.48506 * 109.47195 * 335.03749 * 15 13 11 19 19 C 1.36492 * 119.73331 * 244.98204 * 5 2 1 20 20 H 1.08993 * 109.47366 * 299.99455 * 1 2 3 21 21 H 1.09002 * 109.47121 * 60.00098 * 1 2 3 22 22 H 1.09006 * 109.46721 * 179.97438 * 1 2 3 23 23 H 1.07994 * 119.70285 * 0.02562 * 6 5 2 24 24 H 1.07994 * 119.97032 * 179.97438 * 7 6 5 25 25 H 0.96703 * 114.00212 * 85.16622 * 9 8 7 26 26 H 0.97008 * 119.99944 * 180.02562 * 14 13 11 27 27 H 1.08003 * 120.03231 * 0.02681 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0324 -0.7104 1.2304 6 6 1.7816 -2.0660 1.3932 7 6 2.2339 -2.7356 2.5157 8 6 2.9442 -2.0550 3.4898 9 8 3.3902 -2.7075 4.5922 10 6 3.1961 -0.6738 3.3291 11 6 3.9131 0.0387 4.3144 12 1 3.8786 -0.2824 5.3450 13 6 4.6684 1.1607 3.9560 14 7 4.9958 2.0459 4.8625 15 14 5.2095 1.3950 2.1835 16 1 4.2354 2.2674 1.4797 17 1 6.5521 2.0289 2.1554 18 1 5.2711 0.0749 1.5061 19 6 2.7306 -0.0159 2.1754 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.2285 -2.6025 0.6366 24 1 2.0328 -3.7902 2.6324 25 1 4.2418 -3.1491 4.4702 26 1 5.5191 2.8240 4.6139 27 1 2.9210 1.0386 2.0405 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214200442.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = -107.323876 kcal Electronic energy + Delta-G solvation = -13674.751900 eV Core-core repulsion = 11117.510390 eV Total energy + Delta-G solvation = -2557.241510 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.60737 -40.28013 -37.49958 -35.74991 -33.47670 -32.31390 -29.65888 -26.99957 -24.41175 -23.54562 -21.49067 -19.35750 -18.95439 -17.65995 -17.16038 -16.49508 -16.13786 -15.91407 -15.80190 -15.09097 -14.57496 -14.02802 -13.79786 -13.47218 -13.37324 -13.00964 -12.87608 -12.60921 -12.38705 -11.95195 -11.78285 -11.46018 -11.37624 -10.76080 -9.62163 -9.33082 -8.97674 -6.52660 0.53126 0.72670 1.21216 1.34495 1.44179 2.05734 2.46221 3.25518 3.59546 3.78586 3.84622 3.94762 4.25553 4.31047 4.59372 4.70392 4.83380 4.89512 5.12207 5.20761 5.24859 5.38801 5.62602 5.72460 5.89899 6.13250 6.26126 6.54249 6.71273 7.25756 8.10606 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.026553 B = 0.014578 C = 0.010601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.260017 B = 1920.175869 C = 2640.525411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 H 0.088 0.912 4 F -0.220 7.220 5 C -0.096 4.096 6 C -0.197 4.197 7 C -0.106 4.106 8 C -0.017 4.017 9 O -0.505 6.505 10 C 0.051 3.949 11 C -0.470 4.470 12 H 0.057 0.943 13 C 0.052 3.948 14 N -0.838 5.838 15 Si 0.959 3.041 16 H -0.252 1.252 17 H -0.272 1.272 18 H -0.257 1.257 19 C -0.221 4.221 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.072 0.928 23 H 0.129 0.871 24 H 0.133 0.867 25 H 0.382 0.618 26 H 0.296 0.704 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 -2.698 -9.470 10.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.091 3.909 3 H 0.106 0.894 4 F -0.201 7.201 5 C -0.096 4.096 6 C -0.216 4.216 7 C -0.124 4.124 8 C -0.062 4.062 9 O -0.314 6.314 10 C 0.048 3.952 11 C -0.499 4.499 12 H 0.075 0.925 13 C -0.164 4.164 14 N -0.464 5.464 15 Si 0.781 3.219 16 H -0.177 1.177 17 H -0.198 1.198 18 H -0.181 1.181 19 C -0.241 4.241 20 H 0.097 0.903 21 H 0.106 0.894 22 H 0.091 0.909 23 H 0.147 0.853 24 H 0.151 0.849 25 H 0.237 0.763 26 H 0.107 0.893 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.540 -2.267 -9.091 10.411 hybrid contribution 1.028 0.073 -0.121 1.037 sum -3.513 -2.194 -9.212 10.100 Atomic orbital electron populations 1.22295 0.91261 1.04295 1.04219 1.20554 0.96752 0.94841 0.78802 0.89371 1.92776 1.90756 1.83831 1.52773 1.19804 0.98737 0.95294 0.95809 1.20451 1.08164 0.93645 0.99310 1.21254 0.98151 0.99892 0.93102 1.18752 1.06712 0.90269 0.90489 1.84671 1.41217 1.70496 1.35024 1.18127 0.92566 0.92232 0.92274 1.19279 1.26537 1.08495 0.95570 0.92506 1.26833 0.93607 0.92713 1.03292 1.69750 1.29473 1.08672 1.38476 0.85604 0.78055 0.80280 0.77935 1.17668 1.19822 1.18118 1.20646 1.06473 0.98822 0.98139 0.90347 0.89418 0.90901 0.85273 0.84908 0.76329 0.89287 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 9.51 71.98 0.68 -3.43 15 2 C 0.13 4.14 4.16 29.85 0.12 4.26 15 3 H 0.09 2.73 7.85 -2.38 -0.02 2.72 15 4 F -0.22 -7.55 16.93 44.97 0.76 -6.79 15 5 C -0.10 -3.87 5.01 -20.14 -0.10 -3.97 15 6 C -0.20 -7.52 9.13 22.43 0.20 -7.32 15 7 C -0.11 -4.24 9.98 22.34 0.22 -4.01 15 8 C -0.02 -0.80 6.74 23.08 0.16 -0.64 15 9 O -0.50 -22.45 12.84 -89.53 -1.15 -23.60 15 10 C 0.05 2.63 5.13 -21.20 -0.11 2.52 15 11 C -0.47 -26.56 9.19 23.40 0.22 -26.34 15 12 H 0.06 3.54 7.88 -2.91 -0.02 3.52 15 13 C 0.05 2.74 5.38 85.25 0.46 3.20 15 14 N -0.84 -45.44 13.93 21.83 0.30 -45.14 15 15 Si 0.96 41.90 24.56 68.60 1.68 43.58 15 16 H -0.25 -10.19 6.65 99.48 0.66 -9.53 15 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 15 18 H -0.26 -11.66 6.97 99.48 0.69 -10.97 15 19 C -0.22 -10.31 6.83 22.47 0.15 -10.16 15 20 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 21 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 22 H 0.07 1.77 7.67 -2.38 -0.02 1.75 15 23 H 0.13 4.20 7.86 -2.91 -0.02 4.17 15 24 H 0.13 4.48 8.06 -2.91 -0.02 4.46 15 25 H 0.38 13.36 9.06 -74.06 -0.67 12.69 15 26 H 0.30 14.30 8.30 -92.70 -0.77 13.53 15 27 H 0.10 4.77 4.54 -2.91 -0.01 4.76 15 Total: -1.00 -61.52 237.54 4.07 -57.45 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.46 Total: 20.39 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 2.01 Total: -45.90 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.30 Total: -45.14 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.15 Total: -23.60 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.76 Total: -6.79 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.68 Total: 43.58 kcal Total: -61.52 4.07 -57.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214200442.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.872 kcal (2) G-P(sol) polarization free energy of solvation -61.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds