Wall clock time and date at job start Mon Mar 30 2020 02:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47367 * 2 1 4 4 F 1.39906 * 109.46803 * 119.99367 * 2 1 3 5 5 C 1.50699 * 109.47397 * 239.98882 * 2 1 3 6 6 C 1.38822 * 119.73235 * 295.00605 * 5 2 1 7 7 C 1.38301 * 120.59052 * 179.97438 * 6 5 2 8 8 C 1.38447 * 120.05169 * 0.02562 * 7 6 5 9 9 O 1.35644 * 120.26436 * 180.02562 * 8 7 6 10 10 C 1.41318 * 119.47149 * 0.27159 * 8 7 6 11 11 C 1.41144 * 120.29089 * 179.70419 * 10 8 7 12 12 H 1.08000 * 120.00615 * 334.59929 * 11 10 8 13 13 C 1.39936 * 120.00096 * 154.59803 * 11 10 8 14 14 N 1.30870 * 120.00101 * 342.66370 * 13 11 10 15 15 Si 1.86805 * 120.00266 * 162.66214 * 13 11 10 16 16 H 1.48502 * 109.46738 * 60.00152 * 15 13 11 17 17 H 1.48503 * 109.47013 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47256 * 300.00386 * 15 13 11 19 19 C 1.36492 * 119.72885 * 115.02453 * 5 2 1 20 20 H 1.08998 * 109.47367 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47291 * 300.01205 * 1 2 3 22 22 H 1.09001 * 109.46322 * 60.00717 * 1 2 3 23 23 H 1.08000 * 119.70063 * 359.97438 * 6 5 2 24 24 H 1.08002 * 119.97581 * 179.97438 * 7 6 5 25 25 H 0.96699 * 114.00365 * 85.36033 * 9 8 7 26 26 H 0.96999 * 120.00059 * 180.02562 * 14 13 11 27 27 H 1.08003 * 120.03699 * 0.03008 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6594 1.1424 5 6 2.0324 -0.7106 -1.2303 6 6 1.7815 -2.0663 -1.3930 7 6 2.2338 -2.7359 -2.5154 8 6 2.9443 -2.0554 -3.4895 9 8 3.3895 -2.7079 -4.5922 10 6 3.2065 -0.6768 -3.3232 11 6 3.9346 0.0326 -4.3025 12 1 4.6281 -0.4905 -4.9442 13 6 3.7578 1.4137 -4.4420 14 7 2.7044 1.9940 -3.9260 15 14 5.0256 2.4292 -5.3645 16 1 5.1312 1.9381 -6.7620 17 1 4.6089 3.8546 -5.3704 18 1 6.3445 2.3023 -4.6943 19 6 2.7307 -0.0162 -2.1753 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5140 0.8898 22 1 -0.3632 0.5138 -0.8901 23 1 1.2282 -2.6027 -0.6364 24 1 2.0334 -3.7908 -2.6317 25 1 2.7375 -2.7679 -5.3038 26 1 2.5816 2.9513 -4.0230 27 1 2.9220 1.0381 -2.0401 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214200501.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:28 Heat of formation + Delta-G solvation = -107.908586 kcal Electronic energy + Delta-G solvation = -13573.565588 eV Core-core repulsion = 11016.298723 eV Total energy + Delta-G solvation = -2557.266865 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.54818 -40.06488 -37.36335 -35.77159 -33.29201 -31.57905 -29.55409 -27.09952 -24.33818 -23.17958 -21.55525 -19.24202 -18.59448 -17.55563 -17.00869 -16.53519 -15.94890 -15.83910 -15.54847 -14.88114 -14.35950 -13.86279 -13.66253 -13.34361 -13.05692 -12.94926 -12.61505 -12.59308 -12.46823 -12.05948 -11.71942 -11.32866 -11.08615 -10.85660 -9.44162 -9.20405 -8.68787 -6.37260 0.74830 0.96579 1.37729 1.47813 1.51906 2.19019 2.62135 3.44823 3.74185 3.84699 3.97416 4.05252 4.34627 4.47237 4.70329 4.85846 5.01367 5.07677 5.21895 5.23852 5.39570 5.52550 5.78967 5.94812 6.05945 6.26235 6.49170 6.80144 6.84195 7.35067 8.26219 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.029817 B = 0.011532 C = 0.008976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.825179 B = 2427.392541 C = 3118.804133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 H 0.085 0.915 4 F -0.224 7.224 5 C -0.118 4.118 6 C -0.208 4.208 7 C -0.119 4.119 8 C -0.040 4.040 9 O -0.504 6.504 10 C 0.060 3.940 11 C -0.485 4.485 12 H 0.073 0.927 13 C 0.038 3.962 14 N -0.816 5.816 15 Si 0.981 3.019 16 H -0.261 1.261 17 H -0.262 1.262 18 H -0.265 1.265 19 C -0.155 4.155 20 H 0.068 0.932 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.117 0.883 24 H 0.122 0.878 25 H 0.376 0.624 26 H 0.292 0.708 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 0.545 2.360 4.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.098 3.902 3 H 0.103 0.897 4 F -0.205 7.205 5 C -0.119 4.119 6 C -0.227 4.227 7 C -0.137 4.137 8 C -0.086 4.086 9 O -0.313 6.313 10 C 0.057 3.943 11 C -0.513 4.513 12 H 0.091 0.909 13 C -0.178 4.178 14 N -0.442 5.442 15 Si 0.802 3.198 16 H -0.185 1.185 17 H -0.186 1.186 18 H -0.189 1.189 19 C -0.175 4.175 20 H 0.087 0.913 21 H 0.104 0.896 22 H 0.091 0.909 23 H 0.135 0.865 24 H 0.140 0.860 25 H 0.230 0.770 26 H 0.103 0.897 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.940 0.705 2.739 4.080 hybrid contribution 0.123 0.343 -0.793 0.873 sum -2.817 1.048 1.946 3.581 Atomic orbital electron populations 1.22243 0.91850 1.03803 1.03810 1.20442 0.96267 0.94674 0.78843 0.89657 1.92756 1.90788 1.83947 1.53056 1.19845 1.00610 0.95000 0.96415 1.20312 1.08866 0.93776 0.99767 1.21117 0.98390 0.99153 0.95042 1.18784 1.07033 0.91999 0.90751 1.84653 1.43491 1.77005 1.26103 1.18215 0.91650 0.91253 0.93153 1.19618 1.21819 0.93334 1.16562 0.90907 1.26733 0.96681 0.98833 0.95516 1.69834 1.24514 1.13273 1.36543 0.85260 0.78482 0.77023 0.79031 1.18483 1.18637 1.18914 1.20822 1.03112 0.99836 0.93705 0.91319 0.89572 0.90857 0.86479 0.85990 0.76995 0.89735 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 9.51 71.98 0.68 -4.08 15 2 C 0.13 4.98 4.16 29.85 0.12 5.11 15 3 H 0.09 3.07 7.85 -2.39 -0.02 3.05 15 4 F -0.22 -8.63 16.93 44.97 0.76 -7.87 15 5 C -0.12 -5.34 5.01 -20.13 -0.10 -5.44 15 6 C -0.21 -9.06 9.13 22.42 0.20 -8.85 15 7 C -0.12 -5.33 9.98 22.33 0.22 -5.11 15 8 C -0.04 -2.03 6.74 23.08 0.16 -1.88 15 9 O -0.50 -23.25 12.80 -89.58 -1.15 -24.40 15 10 C 0.06 3.27 5.58 -21.20 -0.12 3.15 15 11 C -0.48 -26.28 8.71 23.40 0.20 -26.08 15 12 H 0.07 3.97 7.66 -2.91 -0.02 3.95 15 13 C 0.04 1.89 5.14 85.25 0.44 2.33 15 14 N -0.82 -40.77 10.97 21.83 0.24 -40.53 15 15 Si 0.98 37.71 29.59 68.60 2.03 39.74 15 16 H -0.26 -9.77 7.11 99.48 0.71 -9.07 15 17 H -0.26 -9.32 7.11 99.48 0.71 -8.62 15 18 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 19 C -0.16 -7.99 8.24 22.47 0.19 -7.80 15 20 H 0.07 1.99 7.67 -2.39 -0.02 1.97 15 21 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 22 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 23 H 0.12 4.49 7.86 -2.91 -0.02 4.47 15 24 H 0.12 4.74 8.06 -2.91 -0.02 4.72 15 25 H 0.38 13.91 9.06 -74.06 -0.67 13.24 15 26 H 0.29 13.08 8.30 -92.71 -0.77 12.31 15 27 H 0.11 5.87 6.04 -2.91 -0.02 5.85 15 Total: -1.00 -59.45 242.60 4.40 -55.05 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.52 Total: 26.66 kcal Atomic # 6 Polarization: -50.65 SS G_CDS: 2.00 Total: -48.65 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.24 Total: -40.53 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -1.15 Total: -24.40 kcal Atomic # 9 Polarization: -8.63 SS G_CDS: 0.76 Total: -7.87 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Total: -59.45 4.40 -55.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214200501.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.860 kcal (2) G-P(sol) polarization free energy of solvation -59.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds