Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46773 * 2 1 4 4 C 1.35680 * 117.00024 * 179.97438 * 3 2 1 5 5 C 1.39393 * 119.80194 * 179.97438 * 4 3 2 6 6 C 1.36336 * 120.38013 * 179.97438 * 5 4 3 7 7 C 1.40823 * 119.95742 * 0.02562 * 6 5 4 8 8 C 1.41135 * 120.19971 * 179.97438 * 7 6 5 9 9 H 1.08008 * 119.99938 * 154.44089 * 8 7 6 10 10 C 1.39874 * 120.00191 * 334.43844 * 8 7 6 11 11 N 1.30905 * 119.99851 * 343.18237 * 10 8 7 12 12 Si 1.86802 * 120.00121 * 163.17471 * 10 8 7 13 13 H 1.48504 * 109.46728 * 90.00499 * 12 10 8 14 14 H 1.48493 * 109.47238 * 210.00087 * 12 10 8 15 15 H 1.48497 * 109.47384 * 330.00486 * 12 10 8 16 16 C 1.41109 * 119.60082 * 359.97438 * 7 6 5 17 17 F 1.35100 * 120.18860 * 180.02562 * 16 7 6 18 18 C 1.37750 * 119.62622 * 359.70787 * 16 7 6 19 19 H 1.09001 * 109.47155 * 60.00173 * 1 2 3 20 20 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47505 * 300.00290 * 1 2 3 22 22 H 1.08997 * 109.47259 * 240.00196 * 2 1 3 23 23 H 1.08994 * 109.46740 * 119.99345 * 2 1 3 24 24 H 1.07999 * 119.80428 * 359.97438 * 5 4 3 25 25 H 1.07998 * 120.02474 * 180.02562 * 6 5 4 26 26 H 0.97003 * 120.00356 * 179.97438 * 11 10 8 27 27 H 1.07993 * 119.98433 * 180.30888 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5252 0.0005 5 6 3.8796 2.8152 0.0000 6 6 5.2293 3.0075 0.0011 7 6 6.0976 1.8988 0.0022 8 6 7.4957 2.0920 0.0027 9 1 8.1460 1.3303 0.4070 10 6 8.0392 3.2700 -0.5204 11 7 7.3152 4.0369 -1.2958 12 14 9.7981 3.7488 -0.1123 13 1 10.7165 3.1692 -1.1252 14 1 9.9228 5.2284 -0.1203 15 1 10.1532 3.2293 1.2327 16 6 5.5615 0.5936 0.0027 17 9 6.3836 -0.4785 0.0042 18 6 4.1952 0.4187 0.0082 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 1.8932 -0.5137 0.8900 24 1 3.2158 3.6671 -0.0012 25 1 5.6324 4.0095 0.0011 26 1 7.6919 4.8540 -1.6583 27 1 3.7786 -0.5777 0.0137 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214200665.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = -77.785627 kcal Electronic energy + Delta-G solvation = -13355.253111 eV Core-core repulsion = 10799.292475 eV Total energy + Delta-G solvation = -2555.960636 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.28981 -38.80252 -36.35888 -33.49927 -31.27251 -29.26639 -29.05191 -24.96073 -23.23820 -20.85448 -20.71072 -17.48702 -17.29703 -15.57317 -15.45864 -15.15897 -14.52442 -14.03685 -13.90841 -13.24323 -12.77786 -12.58817 -12.50854 -11.97495 -11.80377 -11.40323 -11.09225 -10.90638 -10.65597 -10.62716 -9.91620 -9.84077 -9.70076 -9.10935 -7.61278 -7.15074 -6.80875 -4.34080 2.63527 2.69055 3.05657 3.08742 3.15417 3.90557 4.07987 4.50135 5.23557 5.35992 5.43459 5.58371 5.75017 5.86951 5.95766 6.06006 6.19297 6.33593 6.66147 6.87329 7.08022 7.32447 7.41300 7.56778 7.90561 7.97194 8.32765 8.51224 8.72768 8.83009 10.12723 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.058446 B = 0.008165 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.959082 B = 3428.372953 C = 3825.637886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.326 6.326 4 C 0.021 3.979 5 C -0.129 4.129 6 C -0.111 4.111 7 C 0.065 3.935 8 C -0.455 4.455 9 H 0.081 0.919 10 C 0.075 3.925 11 N -0.796 5.796 12 Si 0.912 3.088 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.260 1.260 16 C -0.004 4.004 17 F -0.161 7.161 18 C -0.202 4.202 19 H 0.061 0.939 20 H 0.069 0.931 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.104 0.896 25 H 0.134 0.866 26 H 0.283 0.717 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 -2.423 1.591 6.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.242 6.242 4 C -0.023 4.023 5 C -0.148 4.148 6 C -0.130 4.130 7 C 0.062 3.938 8 C -0.485 4.485 9 H 0.099 0.901 10 C -0.142 4.142 11 N -0.422 5.422 12 Si 0.737 3.263 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.184 1.184 16 C -0.024 4.024 17 F -0.140 7.140 18 C -0.222 4.222 19 H 0.081 0.919 20 H 0.088 0.912 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.122 0.878 25 H 0.152 0.848 26 H 0.094 0.906 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.592 -2.103 1.445 6.146 hybrid contribution 1.002 -0.250 0.017 1.033 sum -4.590 -2.353 1.462 5.361 Atomic orbital electron populations 1.21739 0.93942 1.01920 1.02962 1.22475 0.94645 0.84000 1.00574 1.85862 1.20429 1.26919 1.90948 1.18283 0.80549 0.93458 1.09965 1.19879 0.95394 0.93138 1.06348 1.20817 0.90426 0.99492 1.02309 1.17602 0.94539 0.88984 0.92683 1.19394 0.91773 1.02383 1.34907 0.90051 1.25882 1.00455 0.95382 0.92508 1.69819 1.38359 1.11925 1.22082 0.86236 0.81639 0.78193 0.80274 1.19412 1.19982 1.18389 1.17531 0.86307 0.83446 1.15163 1.91272 1.72881 1.54731 1.95091 1.20553 0.92806 0.97291 1.11558 0.91940 0.91227 0.91957 0.93097 0.93123 0.87750 0.84839 0.90647 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 37.16 0.38 -1.42 15 2 C 0.06 0.94 5.45 37.16 0.20 1.15 15 3 O -0.33 -6.67 10.12 -18.74 -0.19 -6.86 15 4 C 0.02 0.49 6.71 -38.81 -0.26 0.23 15 5 C -0.13 -3.04 9.91 -39.84 -0.39 -3.44 15 6 C -0.11 -2.84 8.62 -39.29 -0.34 -3.18 15 7 C 0.07 1.77 5.57 -106.73 -0.59 1.17 15 8 C -0.46 -12.31 8.76 -37.87 -0.33 -12.64 15 9 H 0.08 2.18 7.74 -52.48 -0.41 1.77 15 10 C 0.08 1.88 5.15 -17.33 -0.09 1.79 15 11 N -0.80 -20.28 10.96 55.54 0.61 -19.67 15 12 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 15 13 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 15 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 16 C 0.00 -0.10 7.30 -38.67 -0.28 -0.39 15 17 F -0.16 -4.13 16.73 2.25 0.04 -4.09 15 18 C -0.20 -4.75 8.99 -39.42 -0.35 -5.11 15 19 H 0.06 0.75 8.14 -51.93 -0.42 0.32 15 20 H 0.07 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 22 H 0.05 0.80 7.66 -51.93 -0.40 0.40 15 23 H 0.05 0.78 7.63 -51.93 -0.40 0.39 15 24 H 0.10 2.23 8.06 -52.49 -0.42 1.81 15 25 H 0.13 3.44 6.19 -52.49 -0.32 3.11 15 26 H 0.28 6.51 8.30 -40.82 -0.34 6.17 15 27 H 0.11 2.23 6.27 -52.49 -0.33 1.90 15 LS Contribution 241.74 15.07 3.64 3.64 Total: -1.00 -28.06 241.74 -5.67 -33.73 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -2.68 Total: 1.45 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -2.06 Total: -21.84 kcal Atomic # 7 Polarization: -20.28 SS G_CDS: 0.61 Total: -19.67 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.19 Total: -6.86 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.04 Total: -4.09 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.06 -5.67 -33.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214200665.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.055 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds