Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46773 * 2 1 4 4 C 1.35680 * 117.00024 * 179.97438 * 3 2 1 5 5 C 1.39393 * 119.80194 * 179.97438 * 4 3 2 6 6 C 1.36336 * 120.38013 * 179.97438 * 5 4 3 7 7 C 1.40823 * 119.95742 * 0.02562 * 6 5 4 8 8 C 1.41135 * 120.19971 * 179.97438 * 7 6 5 9 9 H 1.08008 * 119.99938 * 154.44089 * 8 7 6 10 10 C 1.39874 * 120.00191 * 334.43844 * 8 7 6 11 11 N 1.30905 * 119.99851 * 343.18237 * 10 8 7 12 12 Si 1.86802 * 120.00121 * 163.17471 * 10 8 7 13 13 H 1.48504 * 109.46728 * 90.00499 * 12 10 8 14 14 H 1.48493 * 109.47238 * 210.00087 * 12 10 8 15 15 H 1.48497 * 109.47384 * 330.00486 * 12 10 8 16 16 C 1.41109 * 119.60082 * 359.97438 * 7 6 5 17 17 F 1.35100 * 120.18860 * 180.02562 * 16 7 6 18 18 C 1.37750 * 119.62622 * 359.70787 * 16 7 6 19 19 H 1.09001 * 109.47155 * 60.00173 * 1 2 3 20 20 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47505 * 300.00290 * 1 2 3 22 22 H 1.08997 * 109.47259 * 240.00196 * 2 1 3 23 23 H 1.08994 * 109.46740 * 119.99345 * 2 1 3 24 24 H 1.07999 * 119.80428 * 359.97438 * 5 4 3 25 25 H 1.07998 * 120.02474 * 180.02562 * 6 5 4 26 26 H 0.97003 * 120.00356 * 179.97438 * 11 10 8 27 27 H 1.07993 * 119.98433 * 180.30888 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5252 0.0005 5 6 3.8796 2.8152 0.0000 6 6 5.2293 3.0075 0.0011 7 6 6.0976 1.8988 0.0022 8 6 7.4957 2.0920 0.0027 9 1 8.1460 1.3303 0.4070 10 6 8.0392 3.2700 -0.5204 11 7 7.3152 4.0369 -1.2958 12 14 9.7981 3.7488 -0.1123 13 1 10.7165 3.1692 -1.1252 14 1 9.9228 5.2284 -0.1203 15 1 10.1532 3.2293 1.2327 16 6 5.5615 0.5936 0.0027 17 9 6.3836 -0.4785 0.0042 18 6 4.1952 0.4187 0.0082 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 1.8932 -0.5137 0.8900 24 1 3.2158 3.6671 -0.0012 25 1 5.6324 4.0095 0.0011 26 1 7.6919 4.8540 -1.6583 27 1 3.7786 -0.5777 0.0137 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214200665.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = -93.366982 kcal Electronic energy + Delta-G solvation = -13355.928769 eV Core-core repulsion = 10799.292475 eV Total energy + Delta-G solvation = -2556.636294 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.29602 -40.51517 -38.15517 -35.36048 -32.59055 -31.16975 -30.86548 -26.84613 -24.67956 -22.73343 -22.41357 -19.37904 -19.07287 -17.41769 -16.97515 -16.85750 -16.41222 -16.00468 -15.65358 -14.92732 -14.59848 -14.05515 -13.93261 -13.57911 -13.30179 -13.07353 -12.77387 -12.45877 -12.27460 -12.18834 -11.71644 -11.64620 -11.42478 -10.93117 -9.53745 -9.06261 -8.68423 -6.33465 0.70107 0.81459 1.38684 1.46842 1.54236 2.20394 2.56511 2.62314 3.45328 3.89013 4.09010 4.12001 4.26879 4.43752 4.47216 4.69269 4.88687 4.97399 5.00340 5.16621 5.25809 5.43973 5.51806 5.64191 5.93614 6.03172 6.42326 6.63835 6.77682 6.93265 8.27852 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.058446 B = 0.008165 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.959082 B = 3428.372953 C = 3825.637886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 O -0.332 6.332 4 C 0.032 3.968 5 C -0.133 4.133 6 C -0.122 4.122 7 C 0.034 3.966 8 C -0.495 4.495 9 H 0.070 0.930 10 C 0.039 3.961 11 N -0.822 5.822 12 Si 0.986 3.014 13 H -0.264 1.264 14 H -0.258 1.258 15 H -0.261 1.261 16 C -0.032 4.032 17 F -0.165 7.165 18 C -0.201 4.201 19 H 0.063 0.937 20 H 0.100 0.900 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.293 0.707 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 -2.427 1.671 6.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 O -0.248 6.248 4 C -0.012 4.012 5 C -0.152 4.152 6 C -0.141 4.141 7 C 0.032 3.968 8 C -0.524 4.524 9 H 0.089 0.911 10 C -0.177 4.177 11 N -0.448 5.448 12 Si 0.806 3.194 13 H -0.188 1.188 14 H -0.182 1.182 15 H -0.185 1.185 16 C -0.052 4.052 17 F -0.145 7.145 18 C -0.221 4.221 19 H 0.082 0.918 20 H 0.119 0.881 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.145 0.855 25 H 0.144 0.856 26 H 0.104 0.896 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.405 -2.117 1.520 6.915 hybrid contribution 1.069 -0.312 -0.026 1.113 sum -5.337 -2.429 1.494 6.051 Atomic orbital electron populations 1.21762 0.90750 1.04076 1.03222 1.22915 0.97203 0.81861 1.01059 1.85877 1.18465 1.29974 1.90456 1.18370 0.81926 0.93055 1.07897 1.20125 0.95031 0.94510 1.05507 1.20792 0.91260 0.98845 1.03210 1.17955 0.95235 0.89978 0.93674 1.19567 0.92038 1.03785 1.37012 0.91143 1.26704 1.04813 0.94547 0.91608 1.69836 1.40333 1.12416 1.22189 0.85152 0.75952 0.78550 0.79778 1.18827 1.18238 1.18516 1.17822 0.87414 0.83259 1.16739 1.91242 1.73220 1.54718 1.95277 1.20775 0.91790 0.98873 1.10624 0.91785 0.88118 0.91619 0.92732 0.92456 0.85529 0.85573 0.89573 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 10.28 71.98 0.74 -2.21 15 2 C 0.04 1.31 5.45 71.98 0.39 1.70 15 3 O -0.33 -12.87 10.12 -89.98 -0.91 -13.78 15 4 C 0.03 1.44 6.71 22.77 0.15 1.60 15 5 C -0.13 -6.22 9.91 22.10 0.22 -6.01 15 6 C -0.12 -6.33 8.62 22.46 0.19 -6.14 15 7 C 0.03 1.92 5.57 -21.23 -0.12 1.80 15 8 C -0.49 -27.54 8.76 23.38 0.20 -27.34 15 9 H 0.07 3.92 7.74 -2.91 -0.02 3.89 15 10 C 0.04 1.94 5.15 85.23 0.44 2.38 15 11 N -0.82 -42.15 10.96 21.82 0.24 -41.91 15 12 Si 0.99 38.21 29.59 68.60 2.03 40.24 15 13 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 14 H -0.26 -9.25 7.11 99.48 0.71 -8.55 15 15 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 16 C -0.03 -1.69 7.30 22.86 0.17 -1.52 15 17 F -0.17 -8.67 16.73 44.97 0.75 -7.92 15 18 C -0.20 -9.30 8.99 22.38 0.20 -9.10 15 19 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.10 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.06 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.05 1.57 7.66 -2.39 -0.02 1.55 15 23 H 0.06 1.61 7.63 -2.39 -0.02 1.60 15 24 H 0.13 5.25 8.06 -2.91 -0.02 5.22 15 25 H 0.13 6.64 6.19 -2.91 -0.02 6.63 15 26 H 0.29 13.41 8.30 -92.71 -0.77 12.64 15 27 H 0.13 5.31 6.27 -2.91 -0.02 5.29 15 Total: -1.00 -60.26 241.74 5.88 -54.38 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.17 Total: 13.81 kcal Atomic # 6 Polarization: -47.42 SS G_CDS: 2.59 Total: -44.83 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.24 Total: -41.91 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.91 Total: -13.78 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 0.75 Total: -7.92 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -60.26 5.88 -54.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214200665.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.983 kcal (2) G-P(sol) polarization free energy of solvation -60.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds