Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35682 * 117.00004 * 2 1 4 4 C 1.39191 * 119.79904 * 359.97438 * 3 2 1 5 5 C 1.37712 * 120.03726 * 179.97438 * 4 3 2 6 6 F 1.35090 * 120.18906 * 179.97438 * 5 4 3 7 7 C 1.41139 * 119.62076 * 359.97438 * 5 4 3 8 8 C 1.41139 * 120.19672 * 180.02562 * 7 5 4 9 9 H 1.08002 * 119.99939 * 24.65894 * 8 7 5 10 10 C 1.39877 * 120.00308 * 204.65746 * 8 7 5 11 11 N 1.30909 * 119.99640 * 17.81813 * 10 8 7 12 12 Si 1.86799 * 119.99991 * 197.82118 * 10 8 7 13 13 H 1.48505 * 109.47185 * 90.00279 * 12 10 8 14 14 H 1.48508 * 109.46821 * 209.99782 * 12 10 8 15 15 H 1.48499 * 109.47129 * 329.99665 * 12 10 8 16 16 C 1.40785 * 119.60790 * 0.02562 * 7 5 4 17 17 C 1.36381 * 119.95355 * 359.97438 * 16 7 5 18 18 C 1.50703 * 119.81223 * 180.02562 * 17 16 7 19 19 H 1.08994 * 109.47312 * 59.98932 * 1 2 3 20 20 H 1.09003 * 109.47027 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46730 * 299.99305 * 1 2 3 22 22 H 1.08003 * 119.98118 * 359.96861 * 4 3 2 23 23 H 0.97006 * 119.99615 * 179.97438 * 11 10 8 24 24 H 1.07999 * 120.02390 * 180.24868 * 16 7 5 25 25 H 1.08998 * 109.47008 * 90.00235 * 18 17 16 26 26 H 1.09006 * 109.47327 * 210.00407 * 18 17 16 27 27 H 1.08998 * 109.47058 * 329.99859 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2827 2.3736 -0.0005 5 6 1.9028 3.6032 0.0000 6 9 1.1661 4.7356 -0.0011 7 6 3.3125 3.6736 0.0016 8 6 3.9606 4.9274 0.0027 9 1 3.4531 5.7973 0.3926 10 6 5.2603 5.0433 -0.5011 11 7 5.7470 4.1086 -1.2777 12 14 6.3016 6.5318 -0.0657 13 1 7.0728 6.2515 1.1721 14 1 7.2406 6.8217 -1.1790 15 1 5.4191 7.7054 0.1559 16 6 4.0682 2.4858 0.0022 17 6 3.4368 1.2770 0.0016 18 6 4.2489 0.0075 0.0028 19 1 -0.3633 0.5140 -0.8898 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 0.2044 2.3130 -0.0015 23 1 6.6482 4.1891 -1.6274 24 1 5.1472 2.5319 0.0075 25 1 4.4435 -0.2984 1.0307 26 1 3.6957 -0.7783 -0.5117 27 1 5.1950 0.1810 -0.5100 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214200745.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = -77.473742 kcal Electronic energy + Delta-G solvation = -13616.596120 eV Core-core repulsion = 11060.649009 eV Total energy + Delta-G solvation = -2555.947111 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.27949 -38.86224 -36.33514 -33.56637 -31.34442 -29.30443 -27.05163 -25.73284 -24.47911 -21.16608 -20.09604 -17.19024 -17.15681 -15.86759 -15.12164 -14.96560 -14.20471 -13.96383 -13.85106 -13.46730 -12.83208 -12.59317 -12.12352 -11.96509 -11.40889 -11.35848 -11.02728 -11.00304 -10.63157 -10.60774 -9.92358 -9.76749 -9.70085 -9.08283 -7.50869 -7.08596 -6.78689 -4.33469 2.60814 2.69512 3.05901 3.10656 3.13458 3.90778 4.24639 4.47123 5.38821 5.59388 5.66497 5.77763 5.86822 5.92579 6.16732 6.25872 6.45678 6.60110 6.74410 6.94428 7.09755 7.30955 7.46806 7.59388 7.92492 8.00403 8.32400 8.50600 8.73143 8.83700 10.12396 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.041382 B = 0.010477 C = 0.008584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.462919 B = 2671.877574 C = 3260.954043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.324 6.324 3 C 0.020 3.980 4 C -0.200 4.200 5 C -0.007 4.007 6 F -0.161 7.161 7 C 0.067 3.933 8 C -0.455 4.455 9 H 0.082 0.918 10 C 0.076 3.924 11 N -0.794 5.794 12 Si 0.913 3.087 13 H -0.266 1.266 14 H -0.277 1.277 15 H -0.261 1.261 16 C -0.112 4.112 17 C -0.099 4.099 18 C -0.093 4.093 19 H 0.043 0.957 20 H 0.083 0.917 21 H 0.043 0.957 22 H 0.108 0.892 23 H 0.282 0.718 24 H 0.134 0.866 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.331 -3.983 1.589 4.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.240 6.240 3 C -0.024 4.024 4 C -0.219 4.219 5 C -0.028 4.028 6 F -0.140 7.140 7 C 0.064 3.936 8 C -0.484 4.484 9 H 0.100 0.900 10 C -0.142 4.142 11 N -0.419 5.419 12 Si 0.737 3.263 13 H -0.192 1.192 14 H -0.202 1.202 15 H -0.185 1.185 16 C -0.132 4.132 17 C -0.100 4.100 18 C -0.150 4.150 19 H 0.062 0.938 20 H 0.102 0.898 21 H 0.062 0.938 22 H 0.126 0.874 23 H 0.093 0.907 24 H 0.152 0.848 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.058 -4.176 1.437 4.873 hybrid contribution -0.016 1.070 0.057 1.072 sum -2.074 -3.106 1.494 4.023 Atomic orbital electron populations 1.22747 0.80903 1.01906 1.00473 1.85856 1.19174 1.27974 1.90952 1.18087 0.91105 0.82471 1.10750 1.20535 0.98251 0.91804 1.11335 1.17503 0.89372 0.80381 1.15515 1.91267 1.77101 1.50527 1.95119 1.17591 0.88730 0.94751 0.92555 1.19409 0.98316 0.95151 1.35535 0.90013 1.25884 0.97973 0.97891 0.92457 1.69837 1.16695 1.33294 1.22119 0.86232 0.79537 0.81508 0.79038 1.19151 1.20225 1.18536 1.20727 1.00108 0.89222 1.03099 1.18750 0.89856 0.95698 1.05709 1.20479 0.98634 0.95258 1.00654 0.93827 0.89806 0.93837 0.87399 0.90663 0.84799 0.92926 0.92503 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 9.80 101.05 0.99 1.54 15 2 O -0.32 -6.54 9.50 -18.75 -0.18 -6.72 15 3 C 0.02 0.45 6.68 -38.81 -0.26 0.19 15 4 C -0.20 -4.68 8.99 -39.42 -0.35 -5.04 15 5 C -0.01 -0.19 7.30 -38.67 -0.28 -0.47 15 6 F -0.16 -4.15 16.72 2.25 0.04 -4.11 15 7 C 0.07 1.82 5.58 -106.73 -0.60 1.22 15 8 C -0.45 -12.30 8.77 -37.87 -0.33 -12.63 15 9 H 0.08 2.19 7.73 -52.49 -0.41 1.79 15 10 C 0.08 1.89 5.13 -17.33 -0.09 1.80 15 11 N -0.79 -20.18 10.96 55.54 0.61 -19.57 15 12 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 15 13 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 14 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 15 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 16 C -0.11 -2.87 8.25 -39.29 -0.32 -3.20 15 17 C -0.10 -2.33 5.86 -104.87 -0.61 -2.94 15 18 C -0.09 -1.82 9.77 36.01 0.35 -1.46 15 19 H 0.04 0.65 7.64 -51.93 -0.40 0.25 15 20 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 21 H 0.04 0.64 7.65 -51.93 -0.40 0.24 15 22 H 0.11 2.23 6.27 -52.48 -0.33 1.90 15 23 H 0.28 6.49 8.30 -40.82 -0.34 6.15 15 24 H 0.13 3.46 6.17 -52.49 -0.32 3.13 15 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.06 1.05 7.51 -51.93 -0.39 0.66 15 27 H 0.06 1.05 8.08 -51.93 -0.42 0.63 15 LS Contribution 239.87 15.07 3.61 3.61 Total: -1.00 -28.19 239.87 -5.10 -33.28 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -2.64 Total: 0.85 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -1.51 Total: -20.99 kcal Atomic # 7 Polarization: -20.18 SS G_CDS: 0.61 Total: -19.57 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.18 Total: -6.72 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.19 -5.10 -33.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214200745.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.191 kcal (2) G-P(sol) polarization free energy of solvation -28.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds