Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35682 * 117.00004 * 2 1 4 4 C 1.39191 * 119.79904 * 359.97438 * 3 2 1 5 5 C 1.37712 * 120.03726 * 179.97438 * 4 3 2 6 6 F 1.35090 * 120.18906 * 179.97438 * 5 4 3 7 7 C 1.41139 * 119.62076 * 359.97438 * 5 4 3 8 8 C 1.41139 * 120.19672 * 180.02562 * 7 5 4 9 9 H 1.08002 * 119.99939 * 24.65894 * 8 7 5 10 10 C 1.39877 * 120.00308 * 204.65746 * 8 7 5 11 11 N 1.30909 * 119.99640 * 17.81813 * 10 8 7 12 12 Si 1.86799 * 119.99991 * 197.82118 * 10 8 7 13 13 H 1.48505 * 109.47185 * 90.00279 * 12 10 8 14 14 H 1.48508 * 109.46821 * 209.99782 * 12 10 8 15 15 H 1.48499 * 109.47129 * 329.99665 * 12 10 8 16 16 C 1.40785 * 119.60790 * 0.02562 * 7 5 4 17 17 C 1.36381 * 119.95355 * 359.97438 * 16 7 5 18 18 C 1.50703 * 119.81223 * 180.02562 * 17 16 7 19 19 H 1.08994 * 109.47312 * 59.98932 * 1 2 3 20 20 H 1.09003 * 109.47027 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46730 * 299.99305 * 1 2 3 22 22 H 1.08003 * 119.98118 * 359.96861 * 4 3 2 23 23 H 0.97006 * 119.99615 * 179.97438 * 11 10 8 24 24 H 1.07999 * 120.02390 * 180.24868 * 16 7 5 25 25 H 1.08998 * 109.47008 * 90.00235 * 18 17 16 26 26 H 1.09006 * 109.47327 * 210.00407 * 18 17 16 27 27 H 1.08998 * 109.47058 * 329.99859 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2827 2.3736 -0.0005 5 6 1.9028 3.6032 0.0000 6 9 1.1661 4.7356 -0.0011 7 6 3.3125 3.6736 0.0016 8 6 3.9606 4.9274 0.0027 9 1 3.4531 5.7973 0.3926 10 6 5.2603 5.0433 -0.5011 11 7 5.7470 4.1086 -1.2777 12 14 6.3016 6.5318 -0.0657 13 1 7.0728 6.2515 1.1721 14 1 7.2406 6.8217 -1.1790 15 1 5.4191 7.7054 0.1559 16 6 4.0682 2.4858 0.0022 17 6 3.4368 1.2770 0.0016 18 6 4.2489 0.0075 0.0028 19 1 -0.3633 0.5140 -0.8898 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 0.2044 2.3130 -0.0015 23 1 6.6482 4.1891 -1.6274 24 1 5.1472 2.5319 0.0075 25 1 4.4435 -0.2984 1.0307 26 1 3.6957 -0.7783 -0.5117 27 1 5.1950 0.1810 -0.5100 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214200745.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = -93.466019 kcal Electronic energy + Delta-G solvation = -13617.289597 eV Core-core repulsion = 11060.649009 eV Total energy + Delta-G solvation = -2556.640589 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.27810 -40.57842 -38.09459 -35.42356 -33.12854 -31.18867 -28.45629 -27.51469 -26.28660 -22.98938 -21.94140 -19.10413 -18.93203 -17.66058 -16.91682 -16.52144 -16.02346 -15.88015 -15.60381 -15.11875 -14.61226 -14.15047 -13.93191 -13.66352 -13.19467 -12.95911 -12.61266 -12.53112 -12.31314 -12.24269 -11.72566 -11.60598 -11.49266 -10.90666 -9.39995 -8.96658 -8.65044 -6.32108 0.70176 0.83786 1.38439 1.48740 1.51858 2.20569 2.59182 2.72877 3.44278 3.93115 4.08422 4.37382 4.47149 4.47828 4.62375 4.75030 4.88497 4.94996 4.98374 5.18251 5.21865 5.42775 5.63363 5.70382 5.98659 6.09510 6.44660 6.64325 6.78742 6.95414 8.28145 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.041382 B = 0.010477 C = 0.008584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.462919 B = 2671.877574 C = 3260.954043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.329 6.329 3 C 0.029 3.971 4 C -0.200 4.200 5 C -0.039 4.039 6 F -0.167 7.167 7 C 0.035 3.965 8 C -0.495 4.495 9 H 0.068 0.932 10 C 0.040 3.960 11 N -0.819 5.819 12 Si 0.985 3.015 13 H -0.257 1.257 14 H -0.263 1.263 15 H -0.265 1.265 16 C -0.126 4.126 17 C -0.109 4.109 18 C -0.088 4.088 19 H 0.048 0.952 20 H 0.123 0.877 21 H 0.050 0.950 22 H 0.134 0.866 23 H 0.293 0.707 24 H 0.126 0.874 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 -5.039 1.733 5.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.244 6.244 3 C -0.015 4.015 4 C -0.220 4.220 5 C -0.060 4.060 6 F -0.146 7.146 7 C 0.032 3.968 8 C -0.524 4.524 9 H 0.087 0.913 10 C -0.176 4.176 11 N -0.445 5.445 12 Si 0.806 3.194 13 H -0.181 1.181 14 H -0.187 1.187 15 H -0.189 1.189 16 C -0.145 4.145 17 C -0.109 4.109 18 C -0.144 4.144 19 H 0.066 0.934 20 H 0.141 0.859 21 H 0.069 0.931 22 H 0.152 0.848 23 H 0.104 0.896 24 H 0.143 0.857 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.010 -5.261 1.578 5.849 hybrid contribution -0.166 1.241 -0.004 1.252 sum -2.176 -4.020 1.573 4.835 Atomic orbital electron populations 1.23145 0.78105 1.04813 1.01018 1.85854 1.21960 1.26109 1.90469 1.18207 0.91247 0.83402 1.08686 1.20784 0.99744 0.90989 1.10434 1.17808 0.89488 0.81226 1.17448 1.91231 1.77060 1.51001 1.95351 1.17968 0.89674 0.95602 0.93515 1.19556 1.00104 0.94985 1.37796 0.91338 1.26688 0.98280 1.01022 0.91597 1.69854 1.17499 1.34924 1.22251 0.85156 0.77643 0.77307 0.79332 1.18116 1.18706 1.18917 1.20707 0.99741 0.89793 1.04280 1.19195 0.90911 0.96562 1.04272 1.20494 0.98340 0.93478 1.02106 0.93376 0.85857 0.93106 0.84789 0.89611 0.85659 0.91058 0.91260 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.80 113.37 1.11 1.76 15 2 O -0.33 -12.30 9.50 -90.00 -0.86 -13.16 15 3 C 0.03 1.30 6.68 22.77 0.15 1.45 15 4 C -0.20 -9.25 8.99 22.37 0.20 -9.05 15 5 C -0.04 -2.10 7.30 22.86 0.17 -1.93 15 6 F -0.17 -8.86 16.72 44.97 0.75 -8.11 15 7 C 0.04 1.98 5.58 -21.23 -0.12 1.86 15 8 C -0.50 -27.74 8.77 23.38 0.21 -27.54 15 9 H 0.07 3.86 7.73 -2.91 -0.02 3.83 15 10 C 0.04 2.01 5.13 85.23 0.44 2.44 15 11 N -0.82 -42.08 10.96 21.82 0.24 -41.84 15 12 Si 0.99 38.40 29.59 68.60 2.03 40.43 15 13 H -0.26 -9.55 7.11 99.48 0.71 -8.84 15 14 H -0.26 -9.56 7.11 99.48 0.71 -8.85 15 15 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 16 C -0.13 -6.54 8.25 22.46 0.19 -6.36 15 17 C -0.11 -5.01 5.86 -20.03 -0.12 -5.13 15 18 C -0.09 -3.22 9.77 71.24 0.70 -2.53 15 19 H 0.05 1.28 7.64 -2.39 -0.02 1.27 15 20 H 0.12 2.41 8.14 -2.39 -0.02 2.39 15 21 H 0.05 1.33 7.65 -2.39 -0.02 1.31 15 22 H 0.13 5.32 6.27 -2.91 -0.02 5.30 15 23 H 0.29 13.41 8.30 -92.70 -0.77 12.64 15 24 H 0.13 6.62 6.17 -2.91 -0.02 6.60 15 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 26 H 0.07 2.36 7.51 -2.38 -0.02 2.35 15 27 H 0.06 2.19 8.08 -2.39 -0.02 2.17 15 Total: -1.00 -61.11 239.87 6.27 -54.85 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.18 Total: 12.84 kcal Atomic # 6 Polarization: -47.93 SS G_CDS: 2.92 Total: -45.01 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.24 Total: -41.84 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.86 Total: -13.16 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 0.75 Total: -8.11 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -61.11 6.27 -54.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214200745.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.619 kcal (2) G-P(sol) polarization free energy of solvation -61.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds