Wall clock time and date at job start Mon Mar 30 2020 02:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35660 * 117.00175 * 2 1 4 4 C 1.38329 * 120.18976 * 90.00347 * 3 2 1 5 5 C 1.50693 * 119.87776 * 0.02562 * 4 3 2 6 6 C 1.38367 * 120.24255 * 180.02562 * 4 3 2 7 7 C 1.38701 * 120.63382 * 359.97438 * 6 4 3 8 8 C 1.37790 * 120.36913 * 0.27877 * 7 6 4 9 9 F 1.35103 * 120.13119 * 179.69935 * 8 7 6 10 10 C 1.41000 * 119.74032 * 359.47543 * 8 7 6 11 11 C 1.41092 * 120.30185 * 180.27310 * 10 8 7 12 12 H 1.08006 * 119.99483 * 143.94473 * 11 10 8 13 13 C 1.39923 * 120.00300 * 323.93747 * 11 10 8 14 14 N 1.30892 * 119.99915 * 339.42514 * 13 11 10 15 15 Si 1.86799 * 119.99831 * 159.42366 * 13 11 10 16 16 H 1.48497 * 109.47456 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46900 * 120.00399 * 15 13 11 18 18 H 1.48499 * 109.46786 * 240.00303 * 15 13 11 19 19 H 1.08995 * 109.47466 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46804 * 299.99474 * 1 2 3 21 21 H 1.08995 * 109.47757 * 59.99585 * 1 2 3 22 22 H 1.09003 * 109.46739 * 270.02175 * 5 4 3 23 23 H 1.08999 * 109.47043 * 30.01597 * 5 4 3 24 24 H 1.08998 * 109.47302 * 150.02052 * 5 4 3 25 25 H 1.07999 * 119.68291 * 180.02562 * 6 4 3 26 26 H 1.07995 * 119.81522 * 179.97438 * 7 6 4 27 27 H 0.96995 * 120.00005 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 2.3608 1.8285 1.1957 5 6 2.0200 1.1582 2.5016 6 6 2.9885 3.0616 1.1969 7 6 3.3098 3.6923 0.0042 8 6 3.0023 3.1006 -1.2016 9 9 3.3121 3.7220 -2.3606 10 6 2.3674 1.8418 -1.2213 11 6 2.0523 1.2224 -2.4492 12 1 2.1276 0.1495 -2.5478 13 6 1.6422 1.9981 -3.5391 14 7 1.1653 3.2013 -3.3436 15 14 1.7755 1.3167 -5.2733 16 1 2.3417 -0.0552 -5.2239 17 1 0.4267 1.2730 -5.8929 18 1 2.6636 2.1904 -6.0815 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.0218 1.4626 2.8165 23 1 2.0460 0.0762 2.3723 24 1 2.7455 1.4510 3.2605 25 1 3.2314 3.5371 2.1357 26 1 3.7994 4.6548 0.0206 27 1 0.8813 3.7391 -4.0991 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214200903.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:58 Heat of formation + Delta-G solvation = -70.255765 kcal Electronic energy + Delta-G solvation = -13990.980388 eV Core-core repulsion = 11435.346271 eV Total energy + Delta-G solvation = -2555.634116 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -46.97408 -38.49728 -35.66169 -33.82818 -31.08667 -29.49582 -26.67394 -24.99808 -24.90841 -20.97264 -20.28497 -17.14922 -16.66119 -15.73024 -15.00850 -14.54635 -14.23255 -13.75951 -13.61685 -13.30273 -12.75384 -12.60572 -12.12522 -11.77000 -11.30667 -11.21064 -11.12681 -10.90754 -10.69063 -10.32417 -10.11933 -9.59739 -9.18820 -8.67724 -7.45588 -7.06127 -6.84271 -4.43515 2.49259 2.66393 3.08405 3.13153 3.16065 3.95008 4.43719 4.90110 5.41498 5.87012 5.90855 6.08202 6.09725 6.18849 6.25533 6.33054 6.45391 6.50916 6.61705 6.96050 7.12302 7.26538 7.50783 7.61422 7.80168 8.09626 8.33398 8.53360 8.75357 9.02005 10.14622 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.034274 B = 0.013922 C = 0.010613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.753820 B = 2010.662861 C = 2637.731283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C -0.001 4.001 4 C -0.088 4.088 5 C -0.100 4.100 6 C -0.204 4.204 7 C -0.137 4.137 8 C 0.042 3.958 9 F -0.142 7.142 10 C 0.075 3.925 11 C -0.453 4.453 12 H 0.089 0.911 13 C 0.077 3.923 14 N -0.776 5.776 15 Si 0.909 3.091 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.271 1.271 19 H 0.072 0.928 20 H 0.027 0.973 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 -1.668 3.505 3.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.240 6.240 3 C -0.046 4.046 4 C -0.088 4.088 5 C -0.157 4.157 6 C -0.223 4.223 7 C -0.156 4.156 8 C 0.022 3.978 9 F -0.121 7.121 10 C 0.072 3.928 11 C -0.481 4.481 12 H 0.107 0.893 13 C -0.144 4.144 14 N -0.400 5.400 15 Si 0.733 3.267 16 H -0.182 1.182 17 H -0.201 1.201 18 H -0.196 1.196 19 H 0.090 0.910 20 H 0.046 0.954 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.727 -1.618 3.333 3.775 hybrid contribution -0.205 0.293 -1.054 1.113 sum -0.931 -1.324 2.279 2.796 Atomic orbital electron populations 1.22742 0.82384 1.00667 0.99915 1.85892 1.17888 1.26069 1.94162 1.18116 1.05353 0.90237 0.90877 1.19666 1.00671 0.94670 0.93844 1.20555 1.00116 1.00463 0.94563 1.19900 1.09974 0.96570 0.95895 1.20612 1.03419 0.99556 0.92019 1.17655 1.04610 0.95174 0.80407 1.91330 1.90744 1.82028 1.47970 1.17783 0.91472 0.90196 0.93393 1.19334 1.39455 0.95671 0.93659 0.89281 1.25873 0.92681 0.94230 1.01593 1.69800 1.26640 1.09342 1.34212 0.86234 0.78669 0.80446 0.81328 1.18223 1.20052 1.19575 0.90995 0.95409 0.93574 0.92876 0.91902 0.92851 0.88020 0.87919 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 11.13 101.05 1.12 1.87 15 2 O -0.32 -7.55 8.87 -18.68 -0.17 -7.72 15 3 C 0.00 -0.03 5.72 -38.39 -0.22 -0.25 15 4 C -0.09 -1.96 5.89 -104.54 -0.62 -2.58 15 5 C -0.10 -1.79 9.78 36.00 0.35 -1.44 15 6 C -0.20 -4.46 9.68 -39.36 -0.38 -4.84 15 7 C -0.14 -3.22 10.00 -39.57 -0.40 -3.61 15 8 C 0.04 1.13 6.69 -38.70 -0.26 0.87 15 9 F -0.14 -3.91 14.24 2.25 0.03 -3.88 15 10 C 0.08 2.05 5.42 -106.61 -0.58 1.47 15 11 C -0.45 -12.32 8.49 -37.87 -0.32 -12.64 15 12 H 0.09 2.40 7.88 -52.48 -0.41 1.98 15 13 C 0.08 1.98 4.49 -17.32 -0.08 1.91 15 14 N -0.78 -20.79 11.12 55.55 0.62 -20.17 15 15 Si 0.91 19.42 29.61 -169.99 -5.03 14.39 15 16 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 17 H -0.28 -5.68 7.11 56.52 0.40 -5.27 15 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 19 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 20 H 0.03 0.50 8.14 -51.93 -0.42 0.08 15 21 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 22 H 0.05 0.88 8.14 -51.93 -0.42 0.45 15 23 H 0.06 1.11 7.52 -51.93 -0.39 0.72 15 24 H 0.05 0.83 8.08 -51.93 -0.42 0.41 15 25 H 0.10 1.90 8.06 -52.49 -0.42 1.48 15 26 H 0.10 2.15 8.06 -52.49 -0.42 1.73 15 27 H 0.28 6.93 8.30 -40.82 -0.34 6.59 15 LS Contribution 242.90 15.07 3.66 3.66 Total: -1.00 -28.75 242.90 -5.15 -33.90 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -2.89 Total: -0.95 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -1.37 Total: -19.24 kcal Atomic # 7 Polarization: -20.79 SS G_CDS: 0.62 Total: -20.17 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.17 Total: -7.72 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.03 Total: -3.88 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.75 -5.15 -33.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214200903.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.355 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds