Wall clock time and date at job start Mon Mar 30 2020 02:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35660 * 117.00175 * 2 1 4 4 C 1.38329 * 120.18976 * 90.00347 * 3 2 1 5 5 C 1.50693 * 119.87776 * 0.02562 * 4 3 2 6 6 C 1.38367 * 120.24255 * 180.02562 * 4 3 2 7 7 C 1.38701 * 120.63382 * 359.97438 * 6 4 3 8 8 C 1.37790 * 120.36913 * 0.27877 * 7 6 4 9 9 F 1.35103 * 120.13119 * 179.69935 * 8 7 6 10 10 C 1.41000 * 119.74032 * 359.47543 * 8 7 6 11 11 C 1.41092 * 120.30185 * 180.27310 * 10 8 7 12 12 H 1.08006 * 119.99483 * 143.94473 * 11 10 8 13 13 C 1.39923 * 120.00300 * 323.93747 * 11 10 8 14 14 N 1.30892 * 119.99915 * 339.42514 * 13 11 10 15 15 Si 1.86799 * 119.99831 * 159.42366 * 13 11 10 16 16 H 1.48497 * 109.47456 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46900 * 120.00399 * 15 13 11 18 18 H 1.48499 * 109.46786 * 240.00303 * 15 13 11 19 19 H 1.08995 * 109.47466 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46804 * 299.99474 * 1 2 3 21 21 H 1.08995 * 109.47757 * 59.99585 * 1 2 3 22 22 H 1.09003 * 109.46739 * 270.02175 * 5 4 3 23 23 H 1.08999 * 109.47043 * 30.01597 * 5 4 3 24 24 H 1.08998 * 109.47302 * 150.02052 * 5 4 3 25 25 H 1.07999 * 119.68291 * 180.02562 * 6 4 3 26 26 H 1.07995 * 119.81522 * 179.97438 * 7 6 4 27 27 H 0.96995 * 120.00005 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 2.3608 1.8285 1.1957 5 6 2.0200 1.1582 2.5016 6 6 2.9885 3.0616 1.1969 7 6 3.3098 3.6923 0.0042 8 6 3.0023 3.1006 -1.2016 9 9 3.3121 3.7220 -2.3606 10 6 2.3674 1.8418 -1.2213 11 6 2.0523 1.2224 -2.4492 12 1 2.1276 0.1495 -2.5478 13 6 1.6422 1.9981 -3.5391 14 7 1.1653 3.2013 -3.3436 15 14 1.7755 1.3167 -5.2733 16 1 2.3417 -0.0552 -5.2239 17 1 0.4267 1.2730 -5.8929 18 1 2.6636 2.1904 -6.0815 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.0218 1.4626 2.8165 23 1 2.0460 0.0762 2.3723 24 1 2.7455 1.4510 3.2605 25 1 3.2314 3.5371 2.1357 26 1 3.7994 4.6548 0.0206 27 1 0.8813 3.7391 -4.0991 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214200903.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:57 Heat of formation + Delta-G solvation = -86.910840 kcal Electronic energy + Delta-G solvation = -13991.702606 eV Core-core repulsion = 11435.346271 eV Total energy + Delta-G solvation = -2556.356335 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.99764 -40.30084 -37.45721 -35.71496 -32.82511 -31.33738 -28.35871 -26.83826 -26.59533 -22.82250 -22.12090 -19.08941 -18.50782 -17.57045 -16.86705 -16.32437 -16.05223 -15.57763 -15.51744 -15.08460 -14.51943 -14.05143 -13.78623 -13.52387 -13.19781 -12.96173 -12.70150 -12.59471 -12.38019 -12.02617 -11.90373 -11.45317 -11.04441 -10.46793 -9.35785 -8.91074 -8.73943 -6.43140 0.63822 0.82328 1.33158 1.42070 1.48926 2.17833 2.58857 3.07336 3.57390 4.13397 4.24505 4.46687 4.53993 4.62574 4.73867 4.79285 4.86104 4.92386 5.13233 5.13519 5.25639 5.48535 5.64802 5.82163 5.95237 6.21584 6.37136 6.63044 6.80847 7.16997 8.27324 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.034274 B = 0.013922 C = 0.010613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.753820 B = 2010.662861 C = 2637.731283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.337 6.337 3 C -0.013 4.013 4 C -0.094 4.094 5 C -0.095 4.095 6 C -0.191 4.191 7 C -0.140 4.140 8 C 0.002 3.998 9 F -0.157 7.157 10 C 0.040 3.960 11 C -0.488 4.488 12 H 0.076 0.924 13 C 0.037 3.963 14 N -0.814 5.814 15 Si 0.976 3.024 16 H -0.258 1.258 17 H -0.260 1.260 18 H -0.268 1.268 19 H 0.108 0.892 20 H 0.045 0.955 21 H 0.019 0.981 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.144 0.856 26 H 0.126 0.874 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 -1.959 5.047 5.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.254 6.254 3 C -0.058 4.058 4 C -0.095 4.095 5 C -0.152 4.152 6 C -0.210 4.210 7 C -0.159 4.159 8 C -0.018 4.018 9 F -0.136 7.136 10 C 0.037 3.963 11 C -0.517 4.517 12 H 0.094 0.906 13 C -0.179 4.179 14 N -0.438 5.438 15 Si 0.796 3.204 16 H -0.181 1.181 17 H -0.185 1.185 18 H -0.193 1.193 19 H 0.127 0.873 20 H 0.063 0.937 21 H 0.038 0.962 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.162 0.838 26 H 0.144 0.856 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.859 -1.912 4.897 5.326 hybrid contribution -0.168 0.371 -1.318 1.379 sum -1.026 -1.541 3.579 4.029 Atomic orbital electron populations 1.22898 0.80295 1.02967 0.99409 1.85821 1.19791 1.25624 1.94195 1.18476 1.05513 0.90464 0.91309 1.20202 0.99443 0.94832 0.94975 1.20600 1.01918 1.00029 0.92613 1.20444 1.07588 0.96102 0.96846 1.20978 1.02879 1.00494 0.91546 1.18065 1.06720 0.95946 0.81102 1.91271 1.91088 1.82251 1.48972 1.18207 0.92308 0.91235 0.94582 1.19392 1.41895 0.95242 0.95149 0.90562 1.26651 0.91694 0.94414 1.05151 1.69837 1.27935 1.10652 1.35419 0.85245 0.79211 0.79559 0.76342 1.18112 1.18487 1.19269 0.87346 0.93681 0.96229 0.91091 0.91942 0.89950 0.83825 0.85597 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 11.13 113.37 1.26 2.73 15 2 O -0.34 -15.58 8.87 -89.76 -0.80 -16.38 15 3 C -0.01 -0.64 5.72 23.04 0.13 -0.51 15 4 C -0.09 -3.96 5.89 -19.81 -0.12 -4.08 15 5 C -0.10 -3.01 9.78 71.23 0.70 -2.31 15 6 C -0.19 -7.75 9.68 22.41 0.22 -7.53 15 7 C -0.14 -6.42 10.00 22.27 0.22 -6.20 15 8 C 0.00 0.11 6.69 22.84 0.15 0.27 15 9 F -0.16 -8.92 14.24 44.97 0.64 -8.28 15 10 C 0.04 2.24 5.42 -21.15 -0.11 2.12 15 11 C -0.49 -27.56 8.49 23.38 0.20 -27.36 15 12 H 0.08 4.30 7.88 -2.91 -0.02 4.28 15 13 C 0.04 1.99 4.49 85.24 0.38 2.38 15 14 N -0.81 -44.94 11.12 21.83 0.24 -44.69 15 15 Si 0.98 40.76 29.61 68.60 2.03 42.79 15 16 H -0.26 -10.55 7.11 99.48 0.71 -9.84 15 17 H -0.26 -10.14 7.11 99.48 0.71 -9.44 15 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 19 H 0.11 3.26 8.14 -2.39 -0.02 3.24 15 20 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 21 H 0.02 0.82 8.14 -2.39 -0.02 0.80 15 22 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.06 1.99 7.52 -2.39 -0.02 1.97 15 24 H 0.08 2.14 8.08 -2.39 -0.02 2.12 15 25 H 0.14 4.62 8.06 -2.91 -0.02 4.59 15 26 H 0.13 5.05 8.06 -2.91 -0.02 5.03 15 27 H 0.29 14.51 8.30 -92.71 -0.77 13.74 15 Total: -1.00 -63.59 242.90 6.32 -57.28 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.17 Total: 9.79 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 3.03 Total: -40.50 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.24 Total: -44.69 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.80 Total: -16.38 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 0.64 Total: -8.28 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -63.59 6.32 -57.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214200903.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.635 kcal (2) G-P(sol) polarization free energy of solvation -63.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds