Wall clock time and date at job start Mon Mar 30 2020 02:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35671 * 116.99634 * 2 1 4 4 C 1.38396 * 120.18589 * 0.02562 * 3 2 1 5 5 C 1.38267 * 120.20369 * 179.97438 * 4 3 2 6 6 C 1.39061 * 120.56799 * 0.02562 * 5 4 3 7 7 F 1.35095 * 119.82388 * 179.97438 * 6 5 4 8 8 C 1.37654 * 120.35238 * 0.22640 * 6 5 4 9 9 C 1.50705 * 120.10490 * 179.72360 * 8 6 5 10 10 C 1.40732 * 119.79239 * 359.52399 * 8 6 5 11 11 C 1.41139 * 120.27909 * 180.24442 * 10 8 6 12 12 H 1.08003 * 119.99793 * 39.14395 * 11 10 8 13 13 C 1.39930 * 120.00221 * 219.14119 * 11 10 8 14 14 N 1.30862 * 119.99498 * 20.14479 * 13 11 10 15 15 Si 1.86798 * 119.99729 * 200.14031 * 13 11 10 16 16 H 1.48493 * 109.47441 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46740 * 120.00321 * 15 13 11 18 18 H 1.48500 * 109.47300 * 239.99830 * 15 13 11 19 19 H 1.08997 * 109.46872 * 300.00009 * 1 2 3 20 20 H 1.08994 * 109.46705 * 60.00093 * 1 2 3 21 21 H 1.09005 * 109.47079 * 179.97438 * 1 2 3 22 22 H 1.08006 * 119.89812 * 359.97438 * 4 3 2 23 23 H 1.08000 * 119.71617 * 179.97438 * 5 4 3 24 24 H 1.09007 * 109.46928 * 90.00224 * 9 8 6 25 25 H 1.08995 * 109.47152 * 210.00141 * 9 8 6 26 26 H 1.08994 * 109.47204 * 330.00492 * 9 8 6 27 27 H 0.97005 * 119.99481 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2948 2.3720 0.0005 5 6 1.9221 3.6042 0.0011 6 6 3.3100 3.6912 0.0005 7 9 3.9072 4.9030 0.0006 8 6 4.0786 2.5493 -0.0052 9 6 5.5822 2.6501 -0.0120 10 6 3.4558 1.2872 -0.0004 11 6 4.2339 0.1097 -0.0011 12 1 5.1391 0.0603 0.5861 13 6 3.8327 -0.9937 -0.7624 14 7 2.9960 -0.8337 -1.7558 15 14 4.4915 -2.6948 -0.3606 16 1 5.4142 -2.6071 0.7995 17 1 3.3606 -3.5973 -0.0260 18 1 5.2229 -3.2327 -1.5358 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.2162 2.3169 0.0005 23 1 1.3291 4.5068 0.0011 24 1 5.9495 2.6725 1.0140 25 1 6.0019 1.7875 -0.5295 26 1 5.8828 3.5634 -0.5254 27 1 2.7181 -1.5985 -2.2838 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214201059.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:00 Heat of formation + Delta-G solvation = -85.276286 kcal Electronic energy + Delta-G solvation = -13924.199976 eV Core-core repulsion = 11367.914521 eV Total energy + Delta-G solvation = -2556.285455 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.51115 -40.38124 -37.71040 -35.36905 -33.07343 -30.87141 -27.97116 -27.80822 -26.44026 -22.93120 -21.64893 -19.44738 -18.06697 -17.61241 -17.18248 -16.63087 -16.31550 -15.94468 -15.18151 -14.84332 -14.25082 -14.12810 -13.98606 -13.38105 -13.27771 -12.88092 -12.74255 -12.42662 -12.40991 -12.20297 -12.00328 -11.30966 -11.12788 -10.80227 -9.30942 -8.62247 -8.47224 -6.24949 0.78496 0.88647 1.44274 1.49346 1.57386 2.29609 2.76134 3.00182 3.48846 3.82432 4.27511 4.32100 4.48368 4.53820 4.66381 4.76941 4.80344 4.95116 5.06305 5.12623 5.34147 5.46149 5.64533 5.79875 5.89275 6.25888 6.53052 6.63409 6.99457 7.28478 8.46797 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.031663 B = 0.013992 C = 0.010225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.110963 B = 2000.595435 C = 2737.785103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.302 6.302 3 C 0.057 3.943 4 C -0.179 4.179 5 C -0.229 4.229 6 C 0.066 3.934 7 F -0.161 7.161 8 C -0.219 4.219 9 C -0.076 4.076 10 C 0.086 3.914 11 C -0.490 4.490 12 H 0.079 0.921 13 C 0.055 3.945 14 N -0.798 5.798 15 Si 0.969 3.031 16 H -0.261 1.261 17 H -0.269 1.269 18 H -0.269 1.269 19 H 0.054 0.946 20 H 0.044 0.956 21 H 0.101 0.899 22 H 0.134 0.866 23 H 0.129 0.871 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 -0.369 1.957 3.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.011 3.989 4 C -0.199 4.199 5 C -0.249 4.249 6 C 0.047 3.953 7 F -0.140 7.140 8 C -0.221 4.221 9 C -0.133 4.133 10 C 0.083 3.917 11 C -0.519 4.519 12 H 0.097 0.903 13 C -0.163 4.163 14 N -0.423 5.423 15 Si 0.791 3.209 16 H -0.185 1.185 17 H -0.194 1.194 18 H -0.195 1.195 19 H 0.072 0.928 20 H 0.063 0.937 21 H 0.119 0.881 22 H 0.152 0.848 23 H 0.147 0.853 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.697 -0.630 1.756 3.279 hybrid contribution -0.090 -0.218 -0.059 0.243 sum -2.786 -0.848 1.697 3.371 Atomic orbital electron populations 1.23029 0.80064 1.03537 1.00555 1.86150 1.19976 1.26831 1.88498 1.19518 0.92392 0.83963 1.03058 1.20805 0.99400 0.91429 1.08224 1.20407 0.91806 0.98089 1.14619 1.17461 0.91436 0.78998 1.07453 1.91305 1.84581 1.43349 1.94788 1.19949 0.96774 0.91133 1.14261 1.20272 0.90681 1.01281 1.01020 1.17020 0.89527 0.92586 0.92599 1.19361 1.09213 0.97131 1.26189 0.90307 1.26364 0.93765 1.03564 0.92625 1.69786 1.25913 1.33982 1.12603 0.85357 0.78824 0.77502 0.79203 1.18456 1.19414 1.19458 0.92766 0.93719 0.88088 0.84799 0.85280 0.92309 0.91950 0.92707 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.83 9.81 113.37 1.11 1.94 15 2 O -0.30 -14.37 7.39 -89.88 -0.66 -15.03 15 3 C 0.06 2.85 6.17 23.06 0.14 3.00 15 4 C -0.18 -7.98 9.02 22.31 0.20 -7.77 15 5 C -0.23 -10.14 10.02 22.47 0.23 -9.91 15 6 C 0.07 3.11 7.23 22.33 0.16 3.27 15 7 F -0.16 -7.15 16.44 44.97 0.74 -6.41 15 8 C -0.22 -10.93 5.94 -19.39 -0.12 -11.04 15 9 C -0.08 -3.29 9.28 71.24 0.66 -2.63 15 10 C 0.09 4.57 5.36 -21.20 -0.11 4.45 15 11 C -0.49 -25.96 7.59 23.39 0.18 -25.78 15 12 H 0.08 4.06 7.51 -2.91 -0.02 4.03 15 13 C 0.05 2.73 4.41 85.25 0.38 3.10 15 14 N -0.80 -41.34 11.25 21.83 0.25 -41.10 15 15 Si 0.97 38.57 29.60 68.60 2.03 40.61 15 16 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 17 H -0.27 -10.45 7.11 99.48 0.71 -9.74 15 18 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 19 H 0.05 1.67 7.66 -2.39 -0.02 1.65 15 20 H 0.04 1.50 7.66 -2.39 -0.02 1.48 15 21 H 0.10 3.01 8.14 -2.38 -0.02 2.99 15 22 H 0.13 5.01 6.29 -2.91 -0.02 4.99 15 23 H 0.13 4.90 8.06 -2.91 -0.02 4.88 15 24 H 0.06 2.33 8.14 -2.38 -0.02 2.31 15 25 H 0.06 2.74 7.02 -2.39 -0.02 2.73 15 26 H 0.05 2.18 7.62 -2.39 -0.02 2.16 15 27 H 0.28 13.42 8.30 -92.70 -0.77 12.65 15 Total: -1.00 -58.58 237.26 6.36 -52.22 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.18 Total: 11.08 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 2.83 Total: -41.37 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.25 Total: -41.10 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.66 Total: -15.03 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.74 Total: -6.41 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.61 kcal Total: -58.58 6.36 -52.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214201059.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.055 kcal (2) G-P(sol) polarization free energy of solvation -58.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds