Wall clock time and date at job start Mon Mar 30 2020 02:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47353 * 2 1 4 4 C 1.38827 * 119.72106 * 269.98100 * 3 2 1 5 5 C 1.38455 * 120.56781 * 179.97438 * 4 3 2 6 6 F 1.35104 * 119.99373 * 179.97438 * 5 4 3 7 7 C 1.38649 * 120.01185 * 359.71858 * 5 4 3 8 8 O 1.35697 * 120.27936 * 180.30187 * 7 5 4 9 9 C 1.41247 * 119.45041 * 0.57271 * 7 5 4 10 10 C 1.41166 * 120.28026 * 179.70686 * 9 7 5 11 11 H 1.08004 * 119.99789 * 334.32007 * 10 9 7 12 12 C 1.39922 * 120.00551 * 154.32489 * 10 9 7 13 13 N 1.30874 * 119.99547 * 334.31791 * 12 10 9 14 14 Si 1.86802 * 120.00315 * 154.31293 * 12 10 9 15 15 H 1.48491 * 109.47051 * 270.00127 * 14 12 10 16 16 H 1.48496 * 109.46944 * 30.00245 * 14 12 10 17 17 H 1.48503 * 109.46874 * 150.00004 * 14 12 10 18 18 C 1.36471 * 119.72396 * 89.99541 * 3 2 1 19 19 H 1.08994 * 109.47407 * 60.00472 * 1 2 3 20 20 H 1.09006 * 109.47222 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47313 * 299.99850 * 1 2 3 22 22 H 1.08996 * 109.47441 * 239.99657 * 2 1 3 23 23 H 1.09004 * 109.47280 * 119.99553 * 2 1 3 24 24 H 1.07997 * 119.71568 * 359.97342 * 4 3 2 25 25 H 0.96704 * 113.99885 * 272.89319 * 8 7 5 26 26 H 0.96989 * 120.00024 * 354.22956 * 13 12 10 27 27 H 1.08001 * 120.00993 * 0.02827 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0695 -1.2056 5 6 2.7232 3.3749 -1.2261 6 9 2.9434 3.9950 -2.4061 7 6 2.9538 4.0477 -0.0359 8 8 3.3998 5.3292 -0.0496 9 6 2.7262 3.3862 1.1911 10 6 2.9612 4.0524 2.4133 11 1 3.6731 4.8634 2.4580 12 6 2.2720 3.6622 3.5668 13 7 1.1051 3.0782 3.4657 14 14 3.0173 3.9746 5.2509 15 1 3.8442 2.8077 5.6504 16 1 3.8691 5.1898 5.1975 17 1 1.9310 4.1747 6.2435 18 6 2.2578 2.0588 1.1851 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.0798 1.5516 -2.1356 25 1 4.3624 5.4102 -0.0958 26 1 0.6800 2.9911 2.5983 27 1 2.0767 1.5454 2.1179 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214201226.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:36 Heat of formation + Delta-G solvation = -98.420549 kcal Electronic energy + Delta-G solvation = -13656.851395 eV Core-core repulsion = 11099.995962 eV Total energy + Delta-G solvation = -2556.855433 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.85861 -38.38271 -35.96141 -34.34248 -32.20486 -29.25408 -27.68656 -25.32435 -22.95346 -21.35350 -20.14857 -17.98683 -17.05794 -15.74720 -15.63207 -14.83408 -14.20767 -14.06824 -13.54758 -13.49180 -13.00405 -12.77596 -12.25435 -11.87539 -11.59212 -11.41607 -11.06946 -10.62120 -10.51991 -10.38128 -10.22326 -9.82334 -9.34391 -8.99811 -7.73601 -7.53676 -7.23481 -4.61494 2.42324 2.51524 3.09421 3.16597 3.28380 3.90733 4.30727 5.07123 5.26746 5.52666 5.56065 5.70676 5.92221 6.16623 6.24083 6.31588 6.41854 6.58298 6.69150 6.81716 7.23081 7.24191 7.43887 7.57281 7.73504 7.92974 8.04479 8.37080 8.62833 8.94534 9.87150 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.013098 C = 0.009211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.103873 B = 2137.187245 C = 3039.030891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.031 4.031 4 C -0.280 4.280 5 C 0.109 3.891 6 F -0.160 7.160 7 C -0.066 4.066 8 O -0.480 6.480 9 C 0.094 3.906 10 C -0.491 4.491 11 H 0.083 0.917 12 C 0.037 3.963 13 N -0.783 5.783 14 Si 1.071 2.929 15 H -0.273 1.273 16 H -0.274 1.274 17 H -0.275 1.275 18 C -0.212 4.212 19 H 0.052 0.948 20 H 0.048 0.952 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.104 0.896 25 H 0.352 0.648 26 H 0.302 0.698 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -3.290 -1.035 3.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.031 4.031 4 C -0.300 4.300 5 C 0.090 3.910 6 F -0.139 7.139 7 C -0.112 4.112 8 O -0.286 6.286 9 C 0.090 3.910 10 C -0.518 4.518 11 H 0.101 0.899 12 C -0.186 4.186 13 N -0.405 5.405 14 Si 0.894 3.106 15 H -0.198 1.198 16 H -0.199 1.199 17 H -0.200 1.200 18 C -0.231 4.231 19 H 0.071 0.929 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.122 0.878 25 H 0.203 0.797 26 H 0.116 0.884 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.765 -3.393 0.572 3.525 hybrid contribution 0.793 0.270 -2.056 2.220 sum 1.559 -3.123 -1.484 3.793 Atomic orbital electron populations 1.21707 0.95410 1.00560 1.02327 1.20445 0.95748 0.93923 1.01436 1.18952 0.96977 0.94566 0.92629 1.19974 1.18217 0.94351 0.97485 1.18016 1.02180 0.91361 0.79465 1.91333 1.92915 1.83237 1.46427 1.18463 1.16434 0.85779 0.90561 1.84856 1.24572 1.23067 1.96132 1.17755 0.90345 0.91053 0.91849 1.20521 1.21670 1.16297 0.93285 0.89901 1.27168 0.94067 0.91756 1.05657 1.70438 1.11467 1.26644 1.31979 0.83545 0.76369 0.77795 0.72901 1.19816 1.19932 1.19958 1.20720 1.10924 0.94838 0.96610 0.92884 0.93320 0.92327 0.92160 0.91785 0.87824 0.79676 0.88417 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.89 37.16 0.37 -1.95 15 2 C -0.08 -1.39 6.04 -27.89 -0.17 -1.56 15 3 C -0.03 -0.68 5.09 -105.04 -0.54 -1.21 15 4 C -0.28 -6.34 9.66 -39.28 -0.38 -6.72 15 5 C 0.11 2.67 7.30 -39.35 -0.29 2.38 15 6 F -0.16 -3.75 17.11 2.25 0.04 -3.71 15 7 C -0.07 -1.69 6.75 -38.29 -0.26 -1.95 15 8 O -0.48 -11.60 12.67 -18.80 -0.24 -11.84 15 9 C 0.09 2.46 5.31 -106.69 -0.57 1.90 15 10 C -0.49 -12.79 8.64 -37.84 -0.33 -13.12 15 11 H 0.08 2.13 7.73 -52.48 -0.41 1.72 15 12 C 0.04 0.90 4.93 -17.33 -0.09 0.82 15 13 N -0.78 -20.07 12.32 55.55 0.68 -19.38 15 14 Si 1.07 20.81 30.00 -169.99 -5.10 15.71 15 15 H -0.27 -5.09 7.11 56.52 0.40 -4.68 15 16 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 18 C -0.21 -5.18 7.52 -39.27 -0.30 -5.48 15 19 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.06 0.96 8.08 -51.93 -0.42 0.54 15 23 H 0.06 1.09 8.07 -51.93 -0.42 0.67 15 24 H 0.10 2.12 8.06 -52.49 -0.42 1.70 15 25 H 0.35 6.82 9.06 45.56 0.41 7.23 15 26 H 0.30 7.99 6.70 -40.82 -0.27 7.71 15 27 H 0.11 2.82 6.49 -52.49 -0.34 2.48 15 LS Contribution 243.20 15.07 3.66 3.66 Total: -1.00 -27.97 243.20 -5.42 -33.39 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -1.93 Total: 9.07 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -2.54 Total: -26.89 kcal Atomic # 7 Polarization: -20.07 SS G_CDS: 0.68 Total: -19.38 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.24 Total: -11.84 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.04 Total: -3.71 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.10 Total: 15.71 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.97 -5.42 -33.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214201226.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.030 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds