Wall clock time and date at job start Mon Mar 30 2020 02:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47353 * 2 1 4 4 C 1.38827 * 119.72106 * 269.98100 * 3 2 1 5 5 C 1.38455 * 120.56781 * 179.97438 * 4 3 2 6 6 F 1.35104 * 119.99373 * 179.97438 * 5 4 3 7 7 C 1.38649 * 120.01185 * 359.71858 * 5 4 3 8 8 O 1.35697 * 120.27936 * 180.30187 * 7 5 4 9 9 C 1.41247 * 119.45041 * 0.57271 * 7 5 4 10 10 C 1.41166 * 120.28026 * 179.70686 * 9 7 5 11 11 H 1.08004 * 119.99789 * 334.32007 * 10 9 7 12 12 C 1.39922 * 120.00551 * 154.32489 * 10 9 7 13 13 N 1.30874 * 119.99547 * 334.31791 * 12 10 9 14 14 Si 1.86802 * 120.00315 * 154.31293 * 12 10 9 15 15 H 1.48491 * 109.47051 * 270.00127 * 14 12 10 16 16 H 1.48496 * 109.46944 * 30.00245 * 14 12 10 17 17 H 1.48503 * 109.46874 * 150.00004 * 14 12 10 18 18 C 1.36471 * 119.72396 * 89.99541 * 3 2 1 19 19 H 1.08994 * 109.47407 * 60.00472 * 1 2 3 20 20 H 1.09006 * 109.47222 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47313 * 299.99850 * 1 2 3 22 22 H 1.08996 * 109.47441 * 239.99657 * 2 1 3 23 23 H 1.09004 * 109.47280 * 119.99553 * 2 1 3 24 24 H 1.07997 * 119.71568 * 359.97342 * 4 3 2 25 25 H 0.96704 * 113.99885 * 272.89319 * 8 7 5 26 26 H 0.96989 * 120.00024 * 354.22956 * 13 12 10 27 27 H 1.08001 * 120.00993 * 0.02827 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0695 -1.2056 5 6 2.7232 3.3749 -1.2261 6 9 2.9434 3.9950 -2.4061 7 6 2.9538 4.0477 -0.0359 8 8 3.3998 5.3292 -0.0496 9 6 2.7262 3.3862 1.1911 10 6 2.9612 4.0524 2.4133 11 1 3.6731 4.8634 2.4580 12 6 2.2720 3.6622 3.5668 13 7 1.1051 3.0782 3.4657 14 14 3.0173 3.9746 5.2509 15 1 3.8442 2.8077 5.6504 16 1 3.8691 5.1898 5.1975 17 1 1.9310 4.1747 6.2435 18 6 2.2578 2.0588 1.1851 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.0798 1.5516 -2.1356 25 1 4.3624 5.4102 -0.0958 26 1 0.6800 2.9911 2.5983 27 1 2.0767 1.5454 2.1179 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214201226.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:35 Heat of formation + Delta-G solvation = -115.363776 kcal Electronic energy + Delta-G solvation = -13657.586108 eV Core-core repulsion = 11099.995962 eV Total energy + Delta-G solvation = -2557.590147 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.74580 -40.24434 -37.79285 -36.16997 -33.82970 -31.13986 -29.41250 -27.22429 -24.51697 -23.24173 -21.90130 -19.85407 -18.94089 -17.60501 -17.46767 -16.73035 -15.93681 -15.79397 -15.17724 -15.12991 -14.72050 -14.56087 -13.81664 -13.70456 -13.27682 -13.06586 -12.71961 -12.19627 -12.10244 -11.89983 -11.79946 -11.57299 -11.16753 -10.85419 -9.65177 -9.45111 -9.12267 -6.58787 0.53352 0.64872 1.51291 1.60943 1.80056 2.29433 2.48504 3.19490 3.44353 3.72533 4.02042 4.22698 4.51290 4.54182 4.65563 4.74441 4.86192 5.02988 5.14129 5.33140 5.37068 5.41063 5.52168 5.65500 5.83926 6.02081 6.18429 6.48721 6.71791 7.11171 7.91522 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.013098 C = 0.009211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.103873 B = 2137.187245 C = 3039.030891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 C -0.027 4.027 4 C -0.272 4.272 5 C 0.096 3.904 6 F -0.156 7.156 7 C -0.088 4.088 8 O -0.493 6.493 9 C 0.069 3.931 10 C -0.524 4.524 11 H 0.076 0.924 12 C 0.005 3.995 13 N -0.799 5.799 14 Si 1.122 2.878 15 H -0.258 1.258 16 H -0.263 1.263 17 H -0.269 1.269 18 C -0.224 4.224 19 H 0.052 0.948 20 H 0.082 0.918 21 H 0.037 0.963 22 H 0.086 0.914 23 H 0.070 0.930 24 H 0.132 0.868 25 H 0.372 0.628 26 H 0.286 0.714 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 -4.517 -1.183 5.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C -0.027 4.027 4 C -0.292 4.292 5 C 0.076 3.924 6 F -0.135 7.135 7 C -0.134 4.134 8 O -0.301 6.301 9 C 0.066 3.934 10 C -0.551 4.551 11 H 0.094 0.906 12 C -0.213 4.213 13 N -0.421 5.421 14 Si 0.938 3.062 15 H -0.182 1.182 16 H -0.187 1.187 17 H -0.194 1.194 18 C -0.243 4.243 19 H 0.071 0.929 20 H 0.101 0.899 21 H 0.056 0.944 22 H 0.105 0.895 23 H 0.088 0.912 24 H 0.150 0.850 25 H 0.225 0.775 26 H 0.099 0.901 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.885 -4.623 0.392 4.723 hybrid contribution 0.764 0.640 -2.170 2.388 sum 1.649 -3.983 -1.778 4.663 Atomic orbital electron populations 1.21677 0.94090 1.02499 1.01331 1.20543 0.96746 0.91055 1.03081 1.19424 0.95166 0.96669 0.91489 1.20365 1.16284 0.93650 0.98855 1.18216 1.02683 0.92179 0.79316 1.91335 1.92927 1.83310 1.45940 1.18685 1.17405 0.86259 0.91085 1.84764 1.26431 1.22774 1.96157 1.18114 0.90941 0.92050 0.92340 1.20689 1.22782 1.17238 0.94385 0.90592 1.28567 0.93482 0.90415 1.08828 1.70554 1.12267 1.28464 1.30846 0.82940 0.76026 0.78620 0.68627 1.18238 1.18718 1.19407 1.20750 1.11761 0.94479 0.97319 0.92867 0.89949 0.94354 0.89501 0.91174 0.84982 0.77470 0.90113 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 9.89 71.98 0.71 -3.41 15 2 C -0.08 -2.52 6.04 29.85 0.18 -2.34 15 3 C -0.03 -1.15 5.09 -20.14 -0.10 -1.26 15 4 C -0.27 -11.77 9.66 22.46 0.22 -11.55 15 5 C 0.10 4.59 7.30 22.42 0.16 4.76 15 6 F -0.16 -7.14 17.11 44.97 0.77 -6.37 15 7 C -0.09 -4.55 6.75 23.11 0.16 -4.40 15 8 O -0.49 -24.08 12.67 -90.17 -1.14 -25.22 15 9 C 0.07 3.69 5.31 -21.20 -0.11 3.58 15 10 C -0.52 -27.92 8.64 23.40 0.20 -27.72 15 11 H 0.08 4.01 7.73 -2.91 -0.02 3.98 15 12 C 0.00 0.25 4.93 85.24 0.42 0.67 15 13 N -0.80 -41.64 12.32 21.83 0.27 -41.37 15 14 Si 1.12 41.52 30.00 68.60 2.06 43.57 15 15 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 16 H -0.26 -9.14 7.11 99.48 0.71 -8.44 15 17 H -0.27 -9.68 7.11 99.48 0.71 -8.97 15 18 C -0.22 -11.02 7.52 22.47 0.17 -10.85 15 19 H 0.05 1.56 8.14 -2.39 -0.02 1.55 15 20 H 0.08 1.91 8.14 -2.38 -0.02 1.89 15 21 H 0.04 1.28 8.14 -2.39 -0.02 1.26 15 22 H 0.09 2.41 8.08 -2.39 -0.02 2.39 15 23 H 0.07 2.22 8.07 -2.39 -0.02 2.20 15 24 H 0.13 4.93 8.06 -2.91 -0.02 4.91 15 25 H 0.37 14.52 9.06 -74.05 -0.67 13.85 15 26 H 0.29 15.62 6.70 -92.72 -0.62 15.00 15 27 H 0.10 5.27 6.49 -2.91 -0.02 5.25 15 Total: -1.00 -59.85 243.20 4.63 -55.23 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.67 Total: 26.68 kcal Atomic # 6 Polarization: -54.53 SS G_CDS: 2.01 Total: -52.53 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.27 Total: -41.37 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -1.14 Total: -25.22 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.77 Total: -6.37 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.06 Total: 43.57 kcal Total: -59.85 4.63 -55.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214201226.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.136 kcal (2) G-P(sol) polarization free energy of solvation -59.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds