Wall clock time and date at job start Mon Mar 30 2020 02:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35669 * 116.99919 * 2 1 4 4 C 1.38398 * 120.17884 * 90.00250 * 3 2 1 5 5 C 1.50705 * 119.90426 * 359.97315 * 4 3 2 6 6 C 1.38271 * 120.19993 * 179.97438 * 4 3 2 7 7 C 1.39061 * 120.56778 * 359.97438 * 6 4 3 8 8 F 1.35095 * 119.82681 * 179.97438 * 7 6 4 9 9 C 1.37654 * 120.35525 * 359.97438 * 7 6 4 10 10 C 1.40735 * 119.78642 * 0.02562 * 9 7 6 11 11 C 1.41146 * 120.27239 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99876 * 154.56905 * 11 10 9 13 13 C 1.39921 * 120.00448 * 334.57456 * 11 10 9 14 14 N 1.30871 * 119.99941 * 343.00481 * 13 11 10 15 15 Si 1.86803 * 120.00366 * 163.00889 * 13 11 10 16 16 H 1.48497 * 109.46862 * 59.99519 * 15 13 11 17 17 H 1.48498 * 109.47312 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46802 * 300.00118 * 15 13 11 19 19 H 1.09001 * 109.47005 * 300.00355 * 1 2 3 20 20 H 1.09008 * 109.46867 * 60.00174 * 1 2 3 21 21 H 1.09001 * 109.47759 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46772 * 270.02492 * 5 4 3 23 23 H 1.09002 * 109.46906 * 30.01698 * 5 4 3 24 24 H 1.08996 * 109.47739 * 150.02116 * 5 4 3 25 25 H 1.08002 * 119.71577 * 179.69716 * 6 4 3 26 26 H 1.08002 * 120.10883 * 180.02562 * 9 7 6 27 27 H 0.97000 * 120.00332 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 2.3609 1.8287 1.1964 5 6 2.0191 1.1592 2.5026 6 6 2.9890 3.0605 1.1969 7 6 3.3112 3.6905 -0.0002 8 9 3.9244 4.8941 0.0178 9 6 3.0086 3.0944 -1.2035 10 6 2.3693 1.8408 -1.2214 11 6 2.0538 1.2205 -2.4494 12 1 1.9568 0.1461 -2.5024 13 6 1.8668 1.9973 -3.5980 14 7 1.6527 3.2839 -3.4901 15 14 1.9227 1.1981 -5.2855 16 1 0.8637 0.1611 -5.3773 17 1 1.6966 2.2296 -6.3296 18 1 3.2516 0.5679 -5.4910 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3635 -1.0276 -0.0005 22 1 1.0211 1.4644 2.8171 23 1 2.0444 0.0772 2.3738 24 1 2.7446 1.4518 3.2617 25 1 3.2275 3.5394 2.1351 26 1 3.2610 3.5871 -2.1308 27 1 1.5234 3.8225 -4.2864 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214201640.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:01 Heat of formation + Delta-G solvation = -79.811671 kcal Electronic energy + Delta-G solvation = -13747.872164 eV Core-core repulsion = 11191.823673 eV Total energy + Delta-G solvation = -2556.048492 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.67045 -38.53695 -35.69654 -34.05968 -31.16206 -29.04829 -26.72535 -25.53539 -24.81704 -20.91774 -20.33768 -17.25518 -16.43783 -15.93419 -15.44498 -14.75328 -14.55033 -14.19084 -13.46427 -13.08721 -12.68969 -12.55434 -12.19044 -12.01826 -11.68656 -11.37738 -11.13003 -10.91152 -10.60402 -10.27346 -10.07163 -9.91769 -9.26709 -8.69113 -7.57385 -7.18618 -6.88539 -4.53364 2.49316 2.64350 3.00143 3.02514 3.10588 3.82394 4.33441 4.92699 5.47893 5.56008 5.95152 6.07772 6.08051 6.18913 6.25873 6.35408 6.41794 6.52323 6.82423 6.91047 7.11844 7.20829 7.49631 7.67206 7.79629 8.09310 8.29445 8.54136 8.67053 9.01513 10.00238 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.013637 C = 0.009615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.215583 B = 2052.730873 C = 2911.471574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.323 6.323 3 C -0.039 4.039 4 C -0.051 4.051 5 C -0.102 4.102 6 C -0.269 4.269 7 C 0.105 3.895 8 F -0.166 7.166 9 C -0.196 4.196 10 C 0.120 3.880 11 C -0.439 4.439 12 H 0.089 0.911 13 C 0.073 3.927 14 N -0.784 5.784 15 Si 0.915 3.085 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.261 1.261 19 H 0.027 0.973 20 H 0.043 0.957 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.103 0.897 26 H 0.131 0.869 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 -2.458 2.466 3.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.240 6.240 3 C -0.084 4.084 4 C -0.051 4.051 5 C -0.158 4.158 6 C -0.289 4.289 7 C 0.086 3.914 8 F -0.145 7.145 9 C -0.216 4.216 10 C 0.116 3.884 11 C -0.467 4.467 12 H 0.107 0.893 13 C -0.147 4.147 14 N -0.408 5.408 15 Si 0.738 3.262 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.185 1.185 19 H 0.046 0.954 20 H 0.062 0.938 21 H 0.090 0.910 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.121 0.879 26 H 0.149 0.851 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.361 -2.371 2.317 3.584 hybrid contribution -0.165 0.300 -0.803 0.872 sum -1.526 -2.072 1.515 2.986 Atomic orbital electron populations 1.22769 0.82807 1.00608 0.99779 1.85914 1.17613 1.26275 1.94200 1.18408 1.07640 0.90816 0.91508 1.19402 0.98325 0.93405 0.94015 1.20578 1.00268 1.00526 0.94465 1.19998 1.15244 0.98308 0.95364 1.17674 0.97543 0.81022 0.95170 1.91332 1.81405 1.44137 1.97657 1.21161 1.05654 0.99267 0.95561 1.17568 0.88490 0.90143 0.92182 1.19531 1.40029 0.95538 0.91636 0.89273 1.26061 0.92030 0.94632 1.01981 1.69827 1.31755 1.06733 1.32464 0.86252 0.80286 0.79741 0.79886 1.18755 1.20199 1.18510 0.95434 0.93806 0.91045 0.92655 0.91674 0.92729 0.87887 0.85098 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 11.13 101.05 1.12 1.80 15 2 O -0.32 -7.42 8.75 -18.71 -0.16 -7.59 15 3 C -0.04 -0.97 5.72 -38.36 -0.22 -1.19 15 4 C -0.05 -1.15 5.88 -104.55 -0.62 -1.77 15 5 C -0.10 -1.84 9.78 36.01 0.35 -1.49 15 6 C -0.27 -6.22 9.67 -39.26 -0.38 -6.60 15 7 C 0.11 2.62 7.28 -39.49 -0.29 2.33 15 8 F -0.17 -3.97 17.26 2.25 0.04 -3.94 15 9 C -0.20 -5.20 8.65 -38.85 -0.34 -5.54 15 10 C 0.12 3.18 5.58 -106.69 -0.59 2.59 15 11 C -0.44 -11.42 8.71 -37.85 -0.33 -11.75 15 12 H 0.09 2.28 7.66 -52.49 -0.40 1.88 15 13 C 0.07 1.77 5.15 -17.33 -0.09 1.68 15 14 N -0.78 -19.79 10.97 55.55 0.61 -19.18 15 15 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 15 16 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 17 H -0.28 -5.36 7.11 56.52 0.40 -4.95 15 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 19 H 0.03 0.48 8.14 -51.93 -0.42 0.06 15 20 H 0.04 0.89 8.14 -51.92 -0.42 0.47 15 21 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.06 1.15 7.52 -51.93 -0.39 0.76 15 24 H 0.05 0.88 8.08 -51.93 -0.42 0.46 15 25 H 0.10 2.13 8.06 -52.49 -0.42 1.71 15 26 H 0.13 3.57 6.20 -52.49 -0.33 3.24 15 27 H 0.29 6.55 8.30 -40.82 -0.34 6.21 15 LS Contribution 243.83 15.07 3.67 3.67 Total: -1.00 -27.24 243.83 -5.03 -32.28 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -2.79 Total: 1.49 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -1.38 Total: -19.92 kcal Atomic # 7 Polarization: -19.79 SS G_CDS: 0.61 Total: -19.18 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.16 Total: -7.59 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.94 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.24 -5.03 -32.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214201640.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.535 kcal (2) G-P(sol) polarization free energy of solvation -27.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds