Wall clock time and date at job start Mon Mar 30 2020 02:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35669 * 116.99919 * 2 1 4 4 C 1.38398 * 120.17884 * 90.00250 * 3 2 1 5 5 C 1.50705 * 119.90426 * 359.97315 * 4 3 2 6 6 C 1.38271 * 120.19993 * 179.97438 * 4 3 2 7 7 C 1.39061 * 120.56778 * 359.97438 * 6 4 3 8 8 F 1.35095 * 119.82681 * 179.97438 * 7 6 4 9 9 C 1.37654 * 120.35525 * 359.97438 * 7 6 4 10 10 C 1.40735 * 119.78642 * 0.02562 * 9 7 6 11 11 C 1.41146 * 120.27239 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99876 * 154.56905 * 11 10 9 13 13 C 1.39921 * 120.00448 * 334.57456 * 11 10 9 14 14 N 1.30871 * 119.99941 * 343.00481 * 13 11 10 15 15 Si 1.86803 * 120.00366 * 163.00889 * 13 11 10 16 16 H 1.48497 * 109.46862 * 59.99519 * 15 13 11 17 17 H 1.48498 * 109.47312 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46802 * 300.00118 * 15 13 11 19 19 H 1.09001 * 109.47005 * 300.00355 * 1 2 3 20 20 H 1.09008 * 109.46867 * 60.00174 * 1 2 3 21 21 H 1.09001 * 109.47759 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46772 * 270.02492 * 5 4 3 23 23 H 1.09002 * 109.46906 * 30.01698 * 5 4 3 24 24 H 1.08996 * 109.47739 * 150.02116 * 5 4 3 25 25 H 1.08002 * 119.71577 * 179.69716 * 6 4 3 26 26 H 1.08002 * 120.10883 * 180.02562 * 9 7 6 27 27 H 0.97000 * 120.00332 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 2.3609 1.8287 1.1964 5 6 2.0191 1.1592 2.5026 6 6 2.9890 3.0605 1.1969 7 6 3.3112 3.6905 -0.0002 8 9 3.9244 4.8941 0.0178 9 6 3.0086 3.0944 -1.2035 10 6 2.3693 1.8408 -1.2214 11 6 2.0538 1.2205 -2.4494 12 1 1.9568 0.1461 -2.5024 13 6 1.8668 1.9973 -3.5980 14 7 1.6527 3.2839 -3.4901 15 14 1.9227 1.1981 -5.2855 16 1 0.8637 0.1611 -5.3773 17 1 1.6966 2.2296 -6.3296 18 1 3.2516 0.5679 -5.4910 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3635 -1.0276 -0.0005 22 1 1.0211 1.4644 2.8171 23 1 2.0444 0.0772 2.3738 24 1 2.7446 1.4518 3.2617 25 1 3.2275 3.5394 2.1351 26 1 3.2610 3.5871 -2.1308 27 1 1.5234 3.8225 -4.2864 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214201640.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:01 Heat of formation + Delta-G solvation = -94.707141 kcal Electronic energy + Delta-G solvation = -13748.518080 eV Core-core repulsion = 11191.823673 eV Total energy + Delta-G solvation = -2556.694408 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.59900 -40.34322 -37.49917 -35.89273 -32.93456 -30.89366 -28.36895 -27.34780 -26.53861 -22.77004 -22.19190 -19.13741 -18.24077 -17.79399 -17.30767 -16.51573 -16.34835 -15.97583 -15.21083 -14.83778 -14.41430 -14.04602 -13.87532 -13.79175 -13.42775 -12.95899 -12.73497 -12.60552 -12.22368 -12.04120 -11.84826 -11.74243 -11.08564 -10.44546 -9.46906 -9.06119 -8.72487 -6.48089 0.60924 0.80567 1.36250 1.47158 1.50616 2.15606 2.49670 3.14428 3.63304 3.72229 4.29265 4.42425 4.58258 4.67106 4.74309 4.86432 4.87155 4.95651 5.02112 5.08415 5.25460 5.46182 5.62584 5.76208 5.91171 6.20011 6.37337 6.63497 6.75828 7.18957 8.19424 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.013637 C = 0.009615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.215583 B = 2052.730873 C = 2911.471574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.335 6.335 3 C -0.050 4.050 4 C -0.053 4.053 5 C -0.096 4.096 6 C -0.267 4.267 7 C 0.093 3.907 8 F -0.164 7.164 9 C -0.224 4.224 10 C 0.090 3.910 11 C -0.468 4.468 12 H 0.084 0.916 13 C 0.034 3.966 14 N -0.815 5.815 15 Si 0.986 3.014 16 H -0.255 1.255 17 H -0.266 1.266 18 H -0.260 1.260 19 H 0.043 0.957 20 H 0.022 0.978 21 H 0.108 0.892 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.132 0.868 26 H 0.112 0.888 27 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -3.387 3.241 5.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.252 6.252 3 C -0.095 4.095 4 C -0.054 4.054 5 C -0.153 4.153 6 C -0.287 4.287 7 C 0.074 3.926 8 F -0.143 7.143 9 C -0.244 4.244 10 C 0.087 3.913 11 C -0.496 4.496 12 H 0.102 0.898 13 C -0.183 4.183 14 N -0.440 5.440 15 Si 0.806 3.194 16 H -0.179 1.179 17 H -0.190 1.190 18 H -0.184 1.184 19 H 0.061 0.939 20 H 0.041 0.959 21 H 0.126 0.874 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.150 0.850 26 H 0.130 0.870 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.891 -3.295 3.114 4.912 hybrid contribution -0.033 0.586 -0.941 1.109 sum -1.923 -2.709 2.173 3.970 Atomic orbital electron populations 1.22951 0.80589 1.02986 0.99482 1.85847 1.19626 1.25508 1.94227 1.18652 1.07900 0.91184 0.91744 1.19891 0.96868 0.93122 0.95501 1.20627 1.02008 1.00284 0.92352 1.20350 1.14213 0.98462 0.95630 1.17883 0.97833 0.81267 0.95612 1.91325 1.81356 1.43957 1.97674 1.21077 1.07674 1.00100 0.95575 1.17937 0.89125 0.90659 0.93569 1.19682 1.41743 0.95458 0.92724 0.89786 1.26916 0.90895 0.94974 1.05488 1.69876 1.32133 1.08078 1.33903 0.85180 0.80301 0.78974 0.74930 1.17888 1.18992 1.18393 0.93874 0.95923 0.87363 0.90711 0.91298 0.90274 0.85013 0.86983 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.25 11.13 113.37 1.26 2.52 15 2 O -0.34 -15.05 8.75 -89.86 -0.79 -15.83 15 3 C -0.05 -2.47 5.72 23.06 0.13 -2.34 15 4 C -0.05 -2.32 5.88 -19.82 -0.12 -2.43 15 5 C -0.10 -3.13 9.78 71.24 0.70 -2.44 15 6 C -0.27 -11.92 9.67 22.48 0.22 -11.70 15 7 C 0.09 4.68 7.28 22.33 0.16 4.84 15 8 F -0.16 -7.87 17.26 44.97 0.78 -7.09 15 9 C -0.22 -12.24 8.65 22.74 0.20 -12.05 15 10 C 0.09 4.92 5.58 -21.20 -0.12 4.80 15 11 C -0.47 -24.96 8.71 23.39 0.20 -24.76 15 12 H 0.08 4.40 7.66 -2.91 -0.02 4.38 15 13 C 0.03 1.68 5.15 85.24 0.44 2.12 15 14 N -0.82 -42.22 10.97 21.83 0.24 -41.98 15 15 Si 0.99 37.41 29.59 68.60 2.03 39.44 15 16 H -0.25 -9.26 7.11 99.48 0.71 -8.55 15 17 H -0.27 -9.49 7.11 99.48 0.71 -8.78 15 18 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 19 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 20 H 0.02 0.90 8.14 -2.38 -0.02 0.88 15 21 H 0.11 3.10 8.14 -2.39 -0.02 3.08 15 22 H 0.07 2.17 8.14 -2.39 -0.02 2.16 15 23 H 0.07 2.20 7.52 -2.39 -0.02 2.19 15 24 H 0.08 2.20 8.08 -2.39 -0.02 2.18 15 25 H 0.13 5.05 8.06 -2.91 -0.02 5.03 15 26 H 0.11 6.42 6.20 -2.91 -0.02 6.40 15 27 H 0.29 13.68 8.30 -92.71 -0.77 12.91 15 Total: -1.00 -59.16 243.83 6.51 -52.65 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.17 Total: 14.25 kcal Atomic # 6 Polarization: -44.51 SS G_CDS: 3.08 Total: -41.43 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.24 Total: -41.98 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.79 Total: -15.83 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.78 Total: -7.09 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Total: -59.16 6.51 -52.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214201640.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.060 kcal (2) G-P(sol) polarization free energy of solvation -59.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds