Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38171 * 120.01674 * 2 1 4 4 C 1.38429 * 120.03068 * 179.97438 * 3 2 1 5 5 F 1.35103 * 119.96932 * 180.02562 * 4 3 2 6 6 C 1.38475 * 120.06131 * 0.02562 * 4 3 2 7 7 C 1.50697 * 119.98675 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47167 * 280.02103 * 7 6 4 9 9 H 1.08001 * 120.00395 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99889 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00023 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99890 * 179.97438 * 10 8 7 13 13 H 1.48509 * 109.47149 * 90.00324 * 12 10 8 14 14 H 1.48497 * 109.47435 * 210.00324 * 12 10 8 15 15 H 1.48502 * 109.47423 * 330.00464 * 12 10 8 16 16 C 1.38135 * 120.03246 * 0.02562 * 6 4 3 17 17 C 1.38688 * 120.01095 * 179.97438 * 2 1 3 18 18 O 1.35943 * 120.03332 * 0.04201 * 17 2 1 19 19 H 1.09004 * 109.46963 * 90.00063 * 1 2 3 20 20 H 1.09001 * 109.47195 * 209.99842 * 1 2 3 21 21 H 1.09000 * 109.47341 * 330.00380 * 1 2 3 22 22 H 1.07995 * 119.98254 * 359.97438 * 3 2 1 23 23 H 1.09001 * 109.47035 * 40.02571 * 7 6 4 24 24 H 1.09005 * 109.47526 * 160.01614 * 7 6 4 25 25 H 0.97002 * 119.99587 * 179.97438 * 11 10 8 26 26 H 1.07996 * 120.01393 * 179.70182 * 16 6 4 27 27 H 0.96692 * 114.00424 * 269.97708 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1964 0.0000 4 6 3.5825 1.1967 0.0005 5 9 4.2571 2.3673 0.0011 6 6 4.2764 -0.0016 0.0005 7 6 5.7834 0.0007 0.0005 8 6 6.2853 0.2487 -1.3985 9 1 5.5834 0.3901 -2.2070 10 6 7.6409 0.2952 -1.6465 11 7 8.4958 0.1226 -0.6621 12 14 8.2631 0.6019 -3.3809 13 1 8.4252 2.0621 -3.5977 14 1 9.5726 -0.0740 -3.5639 15 1 7.2861 0.0616 -4.3601 16 6 3.5880 -1.1992 -0.0005 17 6 2.2006 -1.2009 0.0005 18 8 1.5218 -2.3788 0.0002 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.6582 2.1317 -0.0004 23 1 6.1455 0.7883 0.6615 24 1 6.1483 -0.9645 0.3518 25 1 9.4494 0.1549 -0.8367 26 1 4.1295 -2.1335 -0.0054 27 1 1.3252 -2.7197 0.8834 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214203445.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = -82.742865 kcal Electronic energy + Delta-G solvation = -13360.312232 eV Core-core repulsion = 10804.136634 eV Total energy + Delta-G solvation = -2556.175598 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.06024 -39.39870 -36.30475 -33.80342 -32.17825 -29.11280 -28.83876 -25.53934 -22.76096 -22.31320 -20.47326 -17.61802 -16.48910 -16.40365 -16.18209 -15.10958 -14.68646 -14.41762 -13.63970 -13.26238 -13.15750 -12.62182 -12.42922 -12.25237 -11.84020 -11.54474 -11.05084 -10.99354 -10.75773 -10.51912 -10.29916 -9.57008 -9.46788 -8.44219 -8.28765 -7.70614 -6.05985 -4.09845 1.58121 1.71927 3.31463 3.37029 3.41561 3.95213 4.42695 4.51528 4.83658 5.15157 5.20995 5.30356 5.58935 5.71104 5.75512 5.87523 6.04043 6.28950 6.42123 6.69726 6.80310 6.83980 7.30214 7.48279 7.62022 7.88516 7.92224 8.25612 8.93391 9.53885 11.04196 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.041666 B = 0.008613 C = 0.008046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.856049 B = 3250.092260 C = 3478.968223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.115 4.115 3 C -0.147 4.147 4 C 0.093 3.907 5 F -0.133 7.133 6 C -0.059 4.059 7 C 0.050 3.950 8 C -0.512 4.512 9 H 0.057 0.943 10 C 0.060 3.940 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.273 1.273 16 C -0.119 4.119 17 C 0.085 3.915 18 O -0.496 6.496 19 H 0.067 0.933 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.129 0.871 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.263 0.737 26 H 0.133 0.867 27 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.964 -1.191 3.251 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.166 4.166 4 C 0.074 3.926 5 F -0.111 7.111 6 C -0.060 4.060 7 C 0.013 3.987 8 C -0.550 4.550 9 H 0.075 0.925 10 C -0.141 4.141 11 N -0.532 5.532 12 Si 0.725 3.275 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.198 1.198 16 C -0.138 4.138 17 C 0.041 3.959 18 O -0.305 6.305 19 H 0.086 0.914 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.147 0.853 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -12.713 -1.097 2.674 13.038 hybrid contribution 0.567 0.318 -0.464 0.799 sum -12.146 -0.779 2.210 12.370 Atomic orbital electron populations 1.20551 0.90808 1.02052 1.02179 1.19745 0.96205 0.91844 1.03740 1.20772 0.92276 0.98316 1.05196 1.17587 0.89270 0.81851 1.03910 1.91482 1.80532 1.45413 1.93696 1.20694 1.00129 0.90387 0.94747 1.18328 0.83096 0.98924 0.98362 1.20988 0.91601 1.49554 0.92889 0.92514 1.24982 0.96765 0.95037 0.97351 1.69952 1.02201 1.49719 1.31357 0.86503 0.78183 0.78452 0.84406 1.20483 1.21087 1.19755 1.21230 0.92509 0.98572 1.01478 1.18258 0.89761 0.84509 1.03367 1.84843 1.76519 1.36276 1.32847 0.91424 0.91699 0.91991 0.85314 0.94649 0.94800 0.92765 0.84864 0.76456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 9.79 36.00 0.35 -0.81 15 2 C -0.11 -1.79 5.89 -104.48 -0.62 -2.41 15 3 C -0.15 -2.49 9.68 -39.54 -0.38 -2.88 15 4 C 0.09 1.94 7.23 -39.42 -0.29 1.65 15 5 F -0.13 -2.97 16.66 2.25 0.04 -2.93 15 6 C -0.06 -1.30 5.08 -104.57 -0.53 -1.83 15 7 C 0.05 1.30 4.82 -29.04 -0.14 1.16 15 8 C -0.51 -14.70 9.09 -34.44 -0.31 -15.01 15 9 H 0.06 1.63 7.74 -52.49 -0.41 1.22 15 10 C 0.06 1.73 5.46 -17.82 -0.10 1.64 15 11 N -0.89 -26.66 13.29 55.43 0.74 -25.92 15 12 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 15 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 16 C -0.12 -2.30 9.61 -39.44 -0.38 -2.68 15 17 C 0.09 1.42 6.68 -39.23 -0.26 1.16 15 18 O -0.50 -6.94 12.55 -19.56 -0.25 -7.18 15 19 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.06 0.67 7.53 -51.93 -0.39 0.27 15 21 H 0.06 0.62 8.09 -51.93 -0.42 0.20 15 22 H 0.13 1.84 8.06 -52.49 -0.42 1.42 15 23 H 0.04 0.99 7.94 -51.93 -0.41 0.58 15 24 H 0.03 0.90 8.00 -51.93 -0.42 0.49 15 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 26 H 0.13 2.47 8.04 -52.49 -0.42 2.05 15 27 H 0.38 3.35 9.06 45.56 0.41 3.76 15 LS Contribution 247.58 15.07 3.73 3.73 Total: -1.00 -31.50 247.58 -5.45 -36.95 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -2.03 Total: -1.58 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -2.65 Total: -20.00 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.25 Total: -7.18 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.50 -5.45 -36.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214203445.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.792 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds