Wall clock time and date at job start Mon Mar 30 2020 02:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35662 * 116.99850 * 2 1 4 4 C 1.38330 * 120.19177 * 359.97438 * 3 2 1 5 5 C 1.38364 * 120.24924 * 179.72971 * 4 3 2 6 6 C 1.38702 * 120.62651 * 0.27521 * 5 4 3 7 7 C 1.50696 * 119.81424 * 180.02562 * 6 5 4 8 8 C 1.37797 * 120.37346 * 359.97438 * 6 5 4 9 9 F 1.35098 * 120.12805 * 180.02562 * 8 6 5 10 10 C 1.40998 * 119.73796 * 359.97438 * 8 6 5 11 11 C 1.41091 * 120.30258 * 180.02562 * 10 8 6 12 12 H 1.07997 * 120.00139 * 143.86823 * 11 10 8 13 13 C 1.39919 * 119.99696 * 323.86995 * 11 10 8 14 14 N 1.30895 * 120.00427 * 339.52553 * 13 11 10 15 15 Si 1.86807 * 119.99761 * 159.52954 * 13 11 10 16 16 H 1.48494 * 109.47228 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47068 * 119.99988 * 15 13 11 18 18 H 1.48497 * 109.46825 * 239.99481 * 15 13 11 19 19 H 1.08996 * 109.47055 * 60.00010 * 1 2 3 20 20 H 1.08998 * 109.46918 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46554 * 299.99815 * 1 2 3 22 22 H 1.07999 * 119.87808 * 0.02562 * 4 3 2 23 23 H 1.07997 * 119.69031 * 180.25679 * 5 4 3 24 24 H 1.08995 * 109.47436 * 89.99931 * 7 6 5 25 25 H 1.09006 * 109.47241 * 210.00300 * 7 6 5 26 26 H 1.09003 * 109.47448 * 329.99725 * 7 6 5 27 27 H 0.97000 * 120.00474 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2953 2.3714 -0.0005 5 6 1.9222 3.6049 0.0051 6 6 3.3064 3.6940 0.0056 7 6 3.9700 5.0470 0.0124 8 6 4.0781 2.5525 0.0010 9 9 5.4259 2.6451 0.0021 10 6 3.4555 1.2874 -0.0036 11 6 4.2342 0.1108 -0.0078 12 1 3.9022 -0.7584 0.5405 13 6 5.4365 0.0701 -0.7223 14 7 5.6542 0.9280 -1.6867 15 14 6.7312 -1.2086 -0.2999 16 1 6.2455 -2.0533 0.8207 17 1 6.9902 -2.0617 -1.4874 18 1 7.9873 -0.5267 0.1031 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 0.2168 2.3162 -0.0005 23 1 1.3282 4.5068 0.0088 24 1 4.1300 5.3681 1.0416 25 1 4.9291 4.9839 -0.5018 26 1 3.3311 5.7677 -0.4979 27 1 6.4875 0.8996 -2.1822 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214203610.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:33 Heat of formation + Delta-G solvation = -85.701166 kcal Electronic energy + Delta-G solvation = -13895.802459 eV Core-core repulsion = 11339.498580 eV Total energy + Delta-G solvation = -2556.303879 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.97138 -40.39779 -37.82265 -35.64876 -32.69480 -31.37891 -28.32796 -27.41373 -26.36269 -22.98492 -21.68561 -19.33683 -18.61411 -17.45901 -16.82888 -16.33308 -16.21842 -15.69711 -15.55857 -15.07119 -14.47325 -13.94641 -13.59028 -13.49170 -13.19562 -13.08523 -12.80231 -12.61819 -12.43637 -12.12069 -11.88201 -11.36406 -11.29605 -10.87566 -9.19068 -8.76733 -8.60114 -6.30125 0.82830 0.84131 1.34950 1.43700 1.50895 2.22785 2.68924 2.80446 3.41621 4.15144 4.22230 4.37147 4.43669 4.51436 4.67367 4.72490 4.78051 4.87563 5.00638 5.16440 5.29450 5.51044 5.62784 5.69258 5.92762 6.22383 6.44202 6.66649 6.85996 7.14575 8.37259 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.026364 B = 0.015469 C = 0.010229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.807292 B = 1809.580842 C = 2736.766354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.337 6.337 3 C 0.031 3.969 4 C -0.190 4.190 5 C -0.166 4.166 6 C -0.144 4.144 7 C -0.093 4.093 8 C 0.024 3.976 9 F -0.151 7.151 10 C 0.027 3.973 11 C -0.494 4.494 12 H 0.072 0.928 13 C 0.035 3.965 14 N -0.822 5.822 15 Si 0.976 3.024 16 H -0.258 1.258 17 H -0.263 1.263 18 H -0.267 1.267 19 H 0.054 0.946 20 H 0.112 0.888 21 H 0.059 0.941 22 H 0.141 0.859 23 H 0.143 0.857 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 2.346 2.160 6.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.252 6.252 3 C -0.014 4.014 4 C -0.208 4.208 5 C -0.185 4.185 6 C -0.145 4.145 7 C -0.150 4.150 8 C 0.003 3.997 9 F -0.130 7.130 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.090 0.910 13 C -0.180 4.180 14 N -0.448 5.448 15 Si 0.797 3.203 16 H -0.182 1.182 17 H -0.187 1.187 18 H -0.192 1.192 19 H 0.073 0.927 20 H 0.130 0.870 21 H 0.077 0.923 22 H 0.159 0.841 23 H 0.161 0.839 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.288 2.226 1.971 6.067 hybrid contribution 0.718 -0.505 -0.092 0.883 sum -4.570 1.721 1.879 5.232 Atomic orbital electron populations 1.23165 0.78034 1.04485 1.01398 1.85935 1.21951 1.27506 1.89816 1.19133 0.91326 0.84544 1.06417 1.21088 0.99683 0.91786 1.08282 1.20396 0.92092 0.97233 1.08734 1.19909 0.94766 0.94434 1.05439 1.20546 0.99685 0.92524 1.02243 1.17607 0.76402 0.93517 1.12142 1.91254 1.30708 1.96796 1.94218 1.17331 0.90212 0.93396 0.96687 1.19301 1.05051 0.99055 1.28916 0.90959 1.26599 1.00152 0.98674 0.92607 1.69852 1.25257 1.34740 1.14929 0.85246 0.77498 0.78066 0.79494 1.18203 1.18740 1.19198 0.92747 0.87004 0.92279 0.84146 0.83894 0.90861 0.93677 0.89617 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 9.81 113.37 1.11 1.85 15 2 O -0.34 -15.61 9.92 -89.78 -0.89 -16.50 15 3 C 0.03 1.55 6.72 23.04 0.15 1.70 15 4 C -0.19 -7.93 9.02 22.32 0.20 -7.73 15 5 C -0.17 -6.71 9.68 22.41 0.22 -6.49 15 6 C -0.14 -6.60 5.88 -19.86 -0.12 -6.72 15 7 C -0.09 -3.40 9.82 71.23 0.70 -2.70 15 8 C 0.02 1.33 6.62 22.84 0.15 1.48 15 9 F -0.15 -8.63 13.43 44.97 0.60 -8.03 15 10 C 0.03 1.54 5.41 -21.15 -0.11 1.42 15 11 C -0.49 -28.95 8.49 23.38 0.20 -28.75 15 12 H 0.07 4.22 7.87 -2.91 -0.02 4.20 15 13 C 0.03 1.91 4.49 85.24 0.38 2.29 15 14 N -0.82 -47.00 11.12 21.83 0.24 -46.75 15 15 Si 0.98 42.21 29.61 68.60 2.03 44.24 15 16 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 17 H -0.26 -10.67 7.11 99.48 0.71 -9.96 15 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 19 H 0.05 1.54 7.66 -2.39 -0.02 1.52 15 20 H 0.11 2.78 8.14 -2.39 -0.02 2.76 15 21 H 0.06 1.61 7.66 -2.39 -0.02 1.59 15 22 H 0.14 4.69 6.29 -2.91 -0.02 4.67 15 23 H 0.14 4.56 8.06 -2.91 -0.02 4.53 15 24 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.04 1.74 7.62 -2.38 -0.02 1.72 15 26 H 0.09 2.54 8.08 -2.39 -0.02 2.52 15 27 H 0.29 14.89 8.30 -92.71 -0.77 14.12 15 Total: -1.00 -67.38 239.17 6.05 -61.33 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.17 Total: 9.35 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 2.89 Total: -43.64 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.24 Total: -46.75 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.89 Total: -16.50 kcal Atomic # 9 Polarization: -8.63 SS G_CDS: 0.60 Total: -8.03 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -67.38 6.05 -61.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214203610.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.370 kcal (2) G-P(sol) polarization free energy of solvation -67.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds