Wall clock time and date at job start Mon Mar 30 2020 02:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35930 * 116.99580 * 2 1 4 4 C 1.38030 * 119.90116 * 359.97438 * 3 2 1 5 5 C 1.40642 * 119.73091 * 179.74280 * 4 3 2 6 6 C 1.41282 * 120.23721 * 180.30105 * 5 4 3 7 7 H 1.08007 * 119.99876 * 149.92371 * 6 5 4 8 8 C 1.39922 * 120.00272 * 329.91062 * 6 5 4 9 9 N 1.30849 * 120.00212 * 162.24412 * 8 6 5 10 10 Si 1.86800 * 120.00152 * 342.24877 * 8 6 5 11 11 H 1.48503 * 109.47268 * 95.43887 * 10 8 6 12 12 H 1.48498 * 109.47376 * 215.44353 * 10 8 6 13 13 H 1.48503 * 109.47089 * 335.44066 * 10 8 6 14 14 C 1.41028 * 119.52076 * 0.54470 * 5 4 3 15 15 F 1.35099 * 120.10482 * 179.72673 * 14 5 4 16 16 C 1.37947 * 119.78662 * 359.45546 * 14 5 4 17 17 C 1.38453 * 120.27005 * 0.27397 * 16 14 5 18 18 C 1.50700 * 119.75547 * 180.02562 * 17 16 14 19 19 H 1.08994 * 109.47111 * 299.99226 * 1 2 3 20 20 H 1.08998 * 109.47329 * 59.99651 * 1 2 3 21 21 H 1.09010 * 109.46642 * 179.97438 * 1 2 3 22 22 H 1.08005 * 120.13585 * 0.02562 * 4 3 2 23 23 H 0.97002 * 120.00491 * 180.02562 * 9 8 6 24 24 H 1.07997 * 119.86752 * 180.25685 * 16 14 5 25 25 H 1.09001 * 109.47318 * 90.00046 * 18 17 16 26 26 H 1.09005 * 109.46547 * 209.99474 * 18 17 16 27 27 H 1.08997 * 109.47104 * 329.99518 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 1.2922 2.3675 -0.0005 5 6 1.9343 3.6187 0.0049 6 6 1.1732 4.8090 0.0109 7 1 1.5644 5.6978 0.4836 8 6 -0.0873 4.8364 -0.5959 9 7 -0.9326 5.7922 -0.3055 10 14 -0.5637 3.5086 -1.8203 11 1 -1.3252 2.4417 -1.1223 12 1 -1.4075 4.1006 -2.8893 13 1 0.6631 2.9277 -2.4228 14 6 3.3434 3.6767 -0.0007 15 9 3.9724 4.8723 -0.0011 16 6 4.0773 2.5087 -0.0002 17 6 3.4362 1.2816 0.0002 18 6 4.2494 0.0128 0.0013 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0278 -0.0005 22 1 0.2136 2.3115 -0.0005 23 1 -1.8066 5.8110 -0.7258 24 1 5.1564 2.5516 -0.0003 25 1 4.4449 -0.2925 1.0293 26 1 3.6963 -0.7736 -0.5123 27 1 5.1949 0.1869 -0.5122 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214203856.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:04 Heat of formation + Delta-G solvation = -77.281698 kcal Electronic energy + Delta-G solvation = -13820.905004 eV Core-core repulsion = 11264.966221 eV Total energy + Delta-G solvation = -2555.938784 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.34452 -39.16057 -36.33311 -33.99761 -31.77252 -28.77255 -27.74782 -26.86980 -23.66633 -21.47005 -20.34515 -17.93566 -16.69612 -15.91033 -15.70734 -15.17010 -14.65819 -14.14176 -13.69019 -13.65751 -12.87745 -12.69377 -12.39545 -11.95008 -11.87226 -11.34889 -11.26580 -11.09021 -10.87705 -10.77739 -10.05604 -9.86205 -9.70562 -9.18656 -7.79966 -7.11338 -7.05925 -4.63022 2.36678 2.43273 2.93150 3.08747 3.19897 3.84027 3.98978 4.27581 5.12372 5.52987 5.61817 5.63626 5.73633 5.87320 5.95638 6.23219 6.30813 6.41184 6.42035 6.52065 6.78084 7.10052 7.17015 7.49461 7.52831 7.81855 8.04275 8.22115 8.51605 8.60159 9.90401 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.026656 B = 0.016465 C = 0.010962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.181970 B = 1700.176925 C = 2553.740324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.324 6.324 3 C 0.156 3.844 4 C -0.304 4.304 5 C 0.091 3.909 6 C -0.433 4.433 7 H 0.098 0.902 8 C 0.085 3.915 9 N -0.796 5.796 10 Si 0.909 3.091 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.242 1.242 14 C -0.033 4.033 15 F -0.157 7.157 16 C -0.081 4.081 17 C -0.221 4.221 18 C -0.077 4.077 19 H 0.052 0.948 20 H 0.047 0.953 21 H 0.090 0.910 22 H 0.115 0.885 23 H 0.288 0.712 24 H 0.114 0.886 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 -8.173 -1.162 8.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.238 6.238 3 C 0.112 3.888 4 C -0.324 4.324 5 C 0.087 3.913 6 C -0.461 4.461 7 H 0.116 0.884 8 C -0.135 4.135 9 N -0.419 5.419 10 Si 0.735 3.265 11 H -0.194 1.194 12 H -0.214 1.214 13 H -0.165 1.165 14 C -0.053 4.053 15 F -0.136 7.136 16 C -0.100 4.100 17 C -0.222 4.222 18 C -0.134 4.134 19 H 0.071 0.929 20 H 0.066 0.934 21 H 0.108 0.892 22 H 0.133 0.867 23 H 0.099 0.901 24 H 0.132 0.868 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.132 -8.120 -1.168 8.281 hybrid contribution -0.629 0.047 -0.453 0.777 sum 0.504 -8.073 -1.621 8.250 Atomic orbital electron populations 1.22976 0.79859 1.02464 1.01424 1.85930 1.20144 1.28383 1.89360 1.18551 0.91445 0.83026 0.95813 1.20855 0.98417 0.91581 1.21571 1.17443 0.90178 0.93176 0.90460 1.19451 0.98791 0.97632 1.30219 0.88435 1.26178 0.94706 0.96311 0.96335 1.69689 1.06382 1.30904 1.34960 0.86373 0.80024 0.80125 0.80020 1.19434 1.21351 1.16465 1.17662 0.90478 0.79724 1.17423 1.91303 1.82259 1.44836 1.95236 1.20285 0.98248 0.90607 1.00832 1.18261 0.89793 0.94367 1.19823 1.20243 0.97873 0.94955 1.00296 0.92902 0.93399 0.89201 0.86728 0.90110 0.86827 0.93483 0.92666 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 15 2 O -0.32 -6.45 9.51 -19.52 -0.19 -6.63 15 3 C 0.16 3.50 6.65 -39.30 -0.26 3.24 15 4 C -0.30 -7.34 6.13 -38.75 -0.24 -7.57 15 5 C 0.09 2.38 5.11 -106.78 -0.55 1.84 15 6 C -0.43 -11.93 9.26 -37.80 -0.35 -12.28 15 7 H 0.10 2.85 7.98 -52.48 -0.42 2.43 15 8 C 0.09 2.22 5.41 -17.34 -0.09 2.12 15 9 N -0.80 -20.90 13.93 55.55 0.77 -20.13 15 10 Si 0.91 20.35 24.02 -169.99 -4.08 16.27 15 11 H -0.27 -5.56 5.98 56.52 0.34 -5.22 15 12 H -0.29 -6.14 7.11 56.52 0.40 -5.74 15 13 H -0.24 -5.64 6.84 56.52 0.39 -5.26 15 14 C -0.03 -0.81 7.31 -38.63 -0.28 -1.10 15 15 F -0.16 -3.92 16.77 2.25 0.04 -3.88 15 16 C -0.08 -1.76 9.64 -39.61 -0.38 -2.14 15 17 C -0.22 -4.70 5.91 -104.19 -0.62 -5.31 15 18 C -0.08 -1.32 9.78 36.01 0.35 -0.97 15 19 H 0.05 0.86 7.65 -51.93 -0.40 0.47 15 20 H 0.05 0.82 6.38 -51.93 -0.33 0.48 15 21 H 0.09 1.13 8.14 -51.92 -0.42 0.70 15 22 H 0.12 2.68 2.97 -52.48 -0.16 2.53 15 23 H 0.29 6.78 8.30 -40.82 -0.34 6.44 15 24 H 0.11 2.14 8.06 -52.49 -0.42 1.72 15 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.05 0.92 7.51 -51.93 -0.39 0.53 15 27 H 0.05 0.73 8.08 -51.93 -0.42 0.31 15 LS Contribution 232.38 15.07 3.50 3.50 Total: -1.00 -27.90 232.38 -3.97 -31.87 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -2.59 Total: -0.28 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -1.42 Total: -20.72 kcal Atomic # 7 Polarization: -20.90 SS G_CDS: 0.77 Total: -20.13 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.19 Total: -6.63 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.04 Total: -3.88 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.08 Total: 16.27 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.90 -3.97 -31.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214203856.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.410 kcal (2) G-P(sol) polarization free energy of solvation -27.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds