Wall clock time and date at job start Mon Mar 30 2020 02:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35930 * 116.99580 * 2 1 4 4 C 1.38030 * 119.90116 * 359.97438 * 3 2 1 5 5 C 1.40642 * 119.73091 * 179.74280 * 4 3 2 6 6 C 1.41282 * 120.23721 * 180.30105 * 5 4 3 7 7 H 1.08007 * 119.99876 * 149.92371 * 6 5 4 8 8 C 1.39922 * 120.00272 * 329.91062 * 6 5 4 9 9 N 1.30849 * 120.00212 * 162.24412 * 8 6 5 10 10 Si 1.86800 * 120.00152 * 342.24877 * 8 6 5 11 11 H 1.48503 * 109.47268 * 95.43887 * 10 8 6 12 12 H 1.48498 * 109.47376 * 215.44353 * 10 8 6 13 13 H 1.48503 * 109.47089 * 335.44066 * 10 8 6 14 14 C 1.41028 * 119.52076 * 0.54470 * 5 4 3 15 15 F 1.35099 * 120.10482 * 179.72673 * 14 5 4 16 16 C 1.37947 * 119.78662 * 359.45546 * 14 5 4 17 17 C 1.38453 * 120.27005 * 0.27397 * 16 14 5 18 18 C 1.50700 * 119.75547 * 180.02562 * 17 16 14 19 19 H 1.08994 * 109.47111 * 299.99226 * 1 2 3 20 20 H 1.08998 * 109.47329 * 59.99651 * 1 2 3 21 21 H 1.09010 * 109.46642 * 179.97438 * 1 2 3 22 22 H 1.08005 * 120.13585 * 0.02562 * 4 3 2 23 23 H 0.97002 * 120.00491 * 180.02562 * 9 8 6 24 24 H 1.07997 * 119.86752 * 180.25685 * 16 14 5 25 25 H 1.09001 * 109.47318 * 90.00046 * 18 17 16 26 26 H 1.09005 * 109.46547 * 209.99474 * 18 17 16 27 27 H 1.08997 * 109.47104 * 329.99518 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 1.2922 2.3675 -0.0005 5 6 1.9343 3.6187 0.0049 6 6 1.1732 4.8090 0.0109 7 1 1.5644 5.6978 0.4836 8 6 -0.0873 4.8364 -0.5959 9 7 -0.9326 5.7922 -0.3055 10 14 -0.5637 3.5086 -1.8203 11 1 -1.3252 2.4417 -1.1223 12 1 -1.4075 4.1006 -2.8893 13 1 0.6631 2.9277 -2.4228 14 6 3.3434 3.6767 -0.0007 15 9 3.9724 4.8723 -0.0011 16 6 4.0773 2.5087 -0.0002 17 6 3.4362 1.2816 0.0002 18 6 4.2494 0.0128 0.0013 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0278 -0.0005 22 1 0.2136 2.3115 -0.0005 23 1 -1.8066 5.8110 -0.7258 24 1 5.1564 2.5516 -0.0003 25 1 4.4449 -0.2925 1.0293 26 1 3.6963 -0.7736 -0.5123 27 1 5.1949 0.1869 -0.5122 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214203856.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:04 Heat of formation + Delta-G solvation = -94.861519 kcal Electronic energy + Delta-G solvation = -13821.667323 eV Core-core repulsion = 11264.966221 eV Total energy + Delta-G solvation = -2556.701102 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.27518 -40.83567 -38.04091 -35.85733 -33.56647 -30.50248 -29.46272 -28.30535 -25.45666 -23.19743 -22.13565 -19.80538 -18.44177 -17.73614 -17.48188 -16.73735 -16.43295 -16.03389 -15.48711 -15.26144 -14.70500 -14.11250 -14.01837 -13.76768 -13.49957 -13.03524 -12.90407 -12.61931 -12.49401 -12.40403 -11.91665 -11.65414 -11.46228 -10.98843 -9.62202 -9.03437 -8.85489 -6.64183 0.54929 0.59370 1.13160 1.31162 1.40137 2.02250 2.41039 2.48189 3.20115 3.84710 4.03353 4.24785 4.32467 4.39334 4.56821 4.64531 4.72799 4.81637 4.93202 5.02543 5.08350 5.34964 5.49342 5.59092 5.76506 5.97760 6.11300 6.32457 6.58758 6.71795 8.04913 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.026656 B = 0.016465 C = 0.010962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.181970 B = 1700.176925 C = 2553.740324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.320 6.320 3 C 0.150 3.850 4 C -0.307 4.307 5 C 0.072 3.928 6 C -0.478 4.478 7 H 0.055 0.945 8 C 0.051 3.949 9 N -0.836 5.836 10 Si 0.958 3.042 11 H -0.239 1.239 12 H -0.270 1.270 13 H -0.257 1.257 14 C -0.066 4.066 15 F -0.167 7.167 16 C -0.073 4.073 17 C -0.208 4.208 18 C -0.076 4.076 19 H 0.051 0.949 20 H 0.043 0.957 21 H 0.136 0.864 22 H 0.120 0.880 23 H 0.299 0.701 24 H 0.148 0.852 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 -11.560 -1.759 11.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.234 6.234 3 C 0.105 3.895 4 C -0.327 4.327 5 C 0.069 3.931 6 C -0.507 4.507 7 H 0.073 0.927 8 C -0.166 4.166 9 N -0.461 5.461 10 Si 0.780 3.220 11 H -0.164 1.164 12 H -0.196 1.196 13 H -0.181 1.181 14 C -0.086 4.086 15 F -0.146 7.146 16 C -0.092 4.092 17 C -0.210 4.210 18 C -0.132 4.132 19 H 0.070 0.930 20 H 0.061 0.939 21 H 0.154 0.846 22 H 0.137 0.863 23 H 0.110 0.890 24 H 0.166 0.834 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.512 -11.515 -1.751 11.745 hybrid contribution -0.618 0.938 -0.204 1.141 sum 0.894 -10.577 -1.955 10.793 Atomic orbital electron populations 1.23339 0.77878 1.05487 1.01101 1.85946 1.22101 1.26543 1.88804 1.18758 0.92210 0.83466 0.95071 1.20969 0.98971 0.91510 1.21217 1.17627 0.90972 0.93461 0.91074 1.19351 1.00695 0.97253 1.33408 0.92663 1.26862 0.94074 0.98400 0.97229 1.69704 1.07246 1.32647 1.36487 0.85638 0.79531 0.78478 0.78334 1.16366 1.19586 1.18135 1.18068 0.90653 0.80564 1.19359 1.91266 1.82249 1.45634 1.95487 1.20666 0.99934 0.89585 0.99029 1.18932 0.90046 0.95957 1.16048 1.20342 0.98314 0.92613 1.01954 0.93034 0.93882 0.84625 0.86294 0.89009 0.83439 0.91687 0.91872 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 15 2 O -0.32 -11.47 9.51 -92.76 -0.88 -12.35 15 3 C 0.15 6.33 6.65 22.45 0.15 6.48 15 4 C -0.31 -14.52 6.13 22.81 0.14 -14.38 15 5 C 0.07 3.84 5.11 -21.26 -0.11 3.73 15 6 C -0.48 -27.87 9.26 23.43 0.22 -27.65 15 7 H 0.06 3.53 7.98 -2.91 -0.02 3.51 15 8 C 0.05 2.73 5.41 85.25 0.46 3.19 15 9 N -0.84 -45.56 13.93 21.82 0.30 -45.25 15 10 Si 0.96 41.57 24.02 68.60 1.65 43.22 15 11 H -0.24 -9.13 5.98 99.48 0.59 -8.54 15 12 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 13 H -0.26 -11.72 6.84 99.48 0.68 -11.04 15 14 C -0.07 -3.33 7.31 22.89 0.17 -3.16 15 15 F -0.17 -8.61 16.77 44.97 0.75 -7.86 15 16 C -0.07 -3.03 9.64 22.25 0.21 -2.82 15 17 C -0.21 -8.13 5.91 -19.58 -0.12 -8.25 15 18 C -0.08 -2.20 9.78 71.24 0.70 -1.51 15 19 H 0.05 1.52 7.65 -2.39 -0.02 1.50 15 20 H 0.04 1.30 6.38 -2.39 -0.02 1.29 15 21 H 0.14 2.69 8.14 -2.38 -0.02 2.67 15 22 H 0.12 5.42 2.97 -2.91 -0.01 5.41 15 23 H 0.30 14.39 8.30 -92.71 -0.77 13.62 15 24 H 0.15 5.02 8.06 -2.91 -0.02 5.00 15 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 15 26 H 0.06 1.78 7.51 -2.38 -0.02 1.76 15 27 H 0.07 1.81 8.08 -2.39 -0.02 1.79 15 Total: -1.00 -62.30 232.38 5.80 -56.50 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.05 Total: 8.52 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 2.93 Total: -42.77 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.30 Total: -45.25 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.88 Total: -12.35 kcal Atomic # 9 Polarization: -8.61 SS G_CDS: 0.75 Total: -7.86 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.65 Total: 43.22 kcal Total: -62.30 5.80 -56.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214203856.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.363 kcal (2) G-P(sol) polarization free energy of solvation -62.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds