Wall clock time and date at job start Mon Mar 30 2020 02:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38321 * 119.89714 * 2 1 4 4 C 1.39016 * 120.56564 * 180.02562 * 3 2 1 5 5 F 1.35095 * 119.82231 * 180.02562 * 4 3 2 6 6 C 1.37693 * 120.35392 * 359.97438 * 4 3 2 7 7 C 1.50699 * 120.10556 * 180.02562 * 6 4 3 8 8 C 1.40698 * 119.79045 * 0.02562 * 6 4 3 9 9 C 1.41139 * 120.27742 * 179.97438 * 8 6 4 10 10 H 1.08001 * 119.99908 * 39.35209 * 9 8 6 11 11 C 1.39928 * 120.00326 * 219.35489 * 9 8 6 12 12 N 1.30870 * 119.99963 * 19.82522 * 11 9 8 13 13 Si 1.86803 * 120.00330 * 199.82959 * 11 9 8 14 14 H 1.48501 * 109.47139 * 59.99593 * 13 11 9 15 15 H 1.48498 * 109.46920 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46930 * 299.99902 * 13 11 9 17 17 C 1.38358 * 119.90093 * 180.28887 * 2 1 3 18 18 O 1.35669 * 120.17917 * 359.97438 * 17 2 1 19 19 H 1.08996 * 109.47571 * 89.99961 * 1 2 3 20 20 H 1.09001 * 109.46999 * 209.99779 * 1 2 3 21 21 H 1.09000 * 109.47315 * 329.99904 * 1 2 3 22 22 H 1.07997 * 119.71988 * 0.02562 * 3 2 1 23 23 H 1.09003 * 109.47678 * 269.98123 * 7 6 4 24 24 H 1.08995 * 109.47256 * 29.98070 * 7 6 4 25 25 H 1.08998 * 109.47359 * 149.98388 * 7 6 4 26 26 H 0.96995 * 120.00551 * 180.02562 * 12 11 9 27 27 H 0.96705 * 114.00072 * 272.87808 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1991 0.0000 4 6 3.5865 1.2153 -0.0005 5 9 4.2446 2.3952 0.0000 6 6 4.2961 0.0354 -0.0005 7 6 5.8029 0.0595 -0.0005 8 6 3.6100 -1.1930 -0.0006 9 6 4.3271 -2.4086 -0.0011 10 1 5.2246 -2.5064 0.5916 11 6 3.8753 -3.4872 -0.7696 12 7 3.0495 -3.2817 -1.7638 13 14 4.4506 -5.2203 -0.3763 14 1 4.0481 -5.5731 1.0089 15 1 3.8315 -6.1757 -1.3298 16 1 5.9292 -5.2898 -0.4949 17 6 2.1967 -1.1994 -0.0060 18 8 1.5200 -2.3753 -0.0115 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.6502 2.1308 0.0004 23 1 6.1663 0.0650 -1.0282 24 1 6.1520 0.9553 0.5130 25 1 6.1805 -0.8244 0.5135 26 1 2.7359 -4.0293 -2.2964 27 1 1.2857 -2.6983 0.8694 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214203930.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:16 Heat of formation + Delta-G solvation = -99.840830 kcal Electronic energy + Delta-G solvation = -13899.583663 eV Core-core repulsion = 11342.666642 eV Total energy + Delta-G solvation = -2556.917021 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.59034 -40.14998 -36.86495 -35.64126 -33.81067 -30.54623 -29.90657 -27.09504 -25.45515 -22.98613 -21.42292 -19.11887 -18.38621 -17.65258 -16.98574 -16.60901 -16.34661 -15.60289 -14.72122 -14.48069 -14.28244 -13.92444 -13.75305 -13.67471 -13.26188 -12.94959 -12.69372 -12.61705 -12.39097 -12.14930 -11.76204 -11.63777 -10.90722 -10.56160 -9.21295 -8.80213 -8.56254 -6.31528 0.71868 0.83500 1.43988 1.50585 1.54306 2.27033 2.69904 3.38275 3.74984 3.95714 4.28032 4.34806 4.59811 4.75161 4.83528 4.90147 4.94193 5.00500 5.18180 5.22789 5.37528 5.68540 5.70237 5.77864 6.01548 6.26251 6.53339 6.78809 6.96362 7.52647 8.45566 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.032584 B = 0.013556 C = 0.010084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.114942 B = 2065.070763 C = 2776.012096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.086 4.086 3 C -0.256 4.256 4 C 0.093 3.907 5 F -0.160 7.160 6 C -0.237 4.237 7 C -0.075 4.075 8 C 0.093 3.907 9 C -0.499 4.499 10 H 0.081 0.919 11 C 0.057 3.943 12 N -0.791 5.791 13 Si 0.972 3.028 14 H -0.259 1.259 15 H -0.276 1.276 16 H -0.265 1.265 17 C 0.022 3.978 18 O -0.472 6.472 19 H 0.061 0.939 20 H 0.068 0.932 21 H 0.076 0.924 22 H 0.128 0.872 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.284 0.716 27 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 0.496 3.556 4.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.276 4.276 4 C 0.074 3.926 5 F -0.139 7.139 6 C -0.239 4.239 7 C -0.132 4.132 8 C 0.090 3.910 9 C -0.527 4.527 10 H 0.099 0.901 11 C -0.162 4.162 12 N -0.415 5.415 13 Si 0.794 3.206 14 H -0.183 1.183 15 H -0.201 1.201 16 H -0.190 1.190 17 C -0.024 4.024 18 O -0.279 6.279 19 H 0.080 0.920 20 H 0.087 0.913 21 H 0.095 0.905 22 H 0.146 0.854 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.931 0.489 2.725 3.376 hybrid contribution 0.324 -0.473 0.370 0.683 sum -1.607 0.016 3.096 3.488 Atomic orbital electron populations 1.20521 0.89527 1.02685 1.01894 1.20009 0.97120 0.91744 0.99853 1.20357 0.91305 0.98172 1.17747 1.17565 0.90711 0.79712 1.04649 1.91316 1.81786 1.46249 1.94513 1.20125 0.96923 0.91575 1.15269 1.20255 0.90867 1.01295 1.00745 1.17907 0.91897 0.92394 0.88802 1.19377 1.10744 0.96399 1.26163 0.90127 1.26411 0.93237 1.03898 0.92668 1.69797 1.24315 1.35152 1.12190 0.85413 0.79062 0.76821 0.79289 1.18317 1.20070 1.18976 1.18551 0.89799 0.84495 1.09529 1.84918 1.75199 1.36912 1.30839 0.91990 0.91349 0.90503 0.85417 0.93257 0.92516 0.91736 0.90569 0.78505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.07 9.78 71.24 0.70 -2.38 15 2 C -0.09 -3.80 5.89 -19.82 -0.12 -3.92 15 3 C -0.26 -11.26 9.67 22.48 0.22 -11.05 15 4 C 0.09 4.36 7.23 22.33 0.16 4.52 15 5 F -0.16 -7.03 16.44 44.97 0.74 -6.29 15 6 C -0.24 -11.71 5.94 -19.39 -0.12 -11.83 15 7 C -0.07 -3.23 9.44 71.24 0.67 -2.56 15 8 C 0.09 4.86 5.36 -21.21 -0.11 4.75 15 9 C -0.50 -25.70 8.03 23.39 0.19 -25.51 15 10 H 0.08 4.01 6.71 -2.91 -0.02 3.99 15 11 C 0.06 2.80 4.42 85.25 0.38 3.18 15 12 N -0.79 -41.48 11.24 21.83 0.25 -41.24 15 13 Si 0.97 37.59 29.60 68.60 2.03 39.62 15 14 H -0.26 -9.65 7.11 99.48 0.71 -8.95 15 15 H -0.28 -10.37 7.11 99.48 0.71 -9.66 15 16 H -0.27 -10.02 7.11 99.48 0.71 -9.31 15 17 C 0.02 1.09 6.16 23.06 0.14 1.23 15 18 O -0.47 -21.87 9.44 -89.85 -0.85 -22.72 15 19 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 20 H 0.07 2.18 7.53 -2.39 -0.02 2.17 15 21 H 0.08 2.20 8.08 -2.39 -0.02 2.18 15 22 H 0.13 4.89 8.06 -2.91 -0.02 4.86 15 23 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.06 2.19 7.62 -2.39 -0.02 2.18 15 25 H 0.06 2.71 6.45 -2.39 -0.02 2.69 15 26 H 0.28 13.79 8.30 -92.71 -0.77 13.03 15 27 H 0.36 13.69 9.06 -74.05 -0.67 13.02 15 Total: -1.00 -58.64 238.05 4.80 -53.84 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.53 Total: 20.35 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 2.11 Total: -43.56 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.25 Total: -41.24 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.85 Total: -22.72 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.74 Total: -6.29 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -58.64 4.80 -53.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214203930.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.000 kcal (2) G-P(sol) polarization free energy of solvation -58.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds