Wall clock time and date at job start Mon Mar 30 2020 02:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47216 * 2 1 4 4 H 1.09005 * 109.47265 * 55.00412 * 3 2 1 5 5 C 1.52999 * 109.47361 * 295.00343 * 3 2 1 6 6 C 1.50708 * 109.47179 * 175.00373 * 3 2 1 7 7 C 1.34537 * 124.92503 * 240.00649 * 6 3 2 8 8 C 1.36804 * 115.34122 * 180.23564 * 7 6 3 9 9 C 1.38292 * 114.19821 * 359.49971 * 8 7 6 10 10 C 1.39910 * 125.40685 * 180.21018 * 9 8 7 11 11 H 1.07996 * 120.00233 * 0.27005 * 10 9 8 12 12 C 1.40071 * 119.99708 * 180.27619 * 10 9 8 13 13 N 1.30865 * 120.00133 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99581 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47252 * 90.00103 * 14 12 10 16 16 H 1.48504 * 109.46689 * 209.99861 * 14 12 10 17 17 H 1.48496 * 109.47127 * 329.99433 * 14 12 10 18 18 S 1.75792 * 124.92675 * 59.95559 * 6 3 2 19 19 H 1.09001 * 109.47088 * 299.99430 * 1 2 3 20 20 H 1.08998 * 109.47126 * 59.99494 * 1 2 3 21 21 H 1.09010 * 109.47319 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46555 * 240.00022 * 2 1 3 23 23 H 1.08998 * 109.47126 * 120.00506 * 2 1 3 24 24 H 1.09004 * 109.46729 * 299.99754 * 5 3 2 25 25 H 1.08998 * 109.47005 * 59.99981 * 5 3 2 26 26 H 1.09001 * 109.47008 * 180.02562 * 5 3 2 27 27 H 1.08002 * 122.32725 * 359.95551 * 7 6 3 28 28 H 1.08001 * 122.90026 * 179.69092 * 8 7 6 29 29 H 0.97007 * 120.00267 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5420 1.4442 0.1237 7 6 4.2318 2.0240 1.1227 8 6 5.5925 1.9104 1.0376 9 6 6.0344 1.2029 -0.0654 10 6 7.3729 0.9429 -0.3787 11 1 8.1588 1.3025 0.2689 12 6 7.6937 0.2165 -1.5326 13 7 6.7414 -0.2195 -2.3172 14 14 9.4809 -0.1299 -1.9513 15 1 9.8955 -1.4128 -1.3288 16 1 9.6349 -0.2225 -3.4254 17 1 10.3330 0.9702 -1.4328 18 16 4.6466 0.6879 -1.0156 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8932 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.0698 1.5875 -2.1491 25 1 0.5489 2.1253 -1.3968 26 1 1.9990 3.1541 -1.3074 27 1 3.7454 2.5469 1.9329 28 1 6.2635 2.3340 1.7703 29 1 6.9635 -0.7230 -3.1161 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214226666.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:30 Heat of formation + Delta-G solvation = -17.280227 kcal Electronic energy + Delta-G solvation = -11603.555375 eV Core-core repulsion = 9616.431626 eV Total energy + Delta-G solvation = -1987.123749 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -36.58641 -35.04064 -33.48917 -29.69252 -28.22378 -25.28401 -23.32001 -21.52683 -19.58391 -18.17320 -17.24088 -15.18746 -14.74089 -14.16728 -13.76985 -13.26467 -12.58566 -12.40330 -12.19439 -11.71899 -11.58984 -11.40202 -11.14233 -11.02728 -10.84371 -10.43059 -10.16886 -10.11353 -9.80034 -9.60161 -9.38479 -8.73555 -7.21876 -6.89951 -6.58669 -4.40857 2.67678 2.96829 3.01974 3.15996 3.71920 3.78211 4.22227 4.23866 5.13859 5.50331 5.55887 5.66261 5.97445 6.06439 6.16261 6.31248 6.44779 6.57723 6.59528 6.71102 6.91758 6.96579 7.01007 7.07019 7.36866 7.70294 7.90944 8.17316 8.27869 8.66498 8.68700 9.93732 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.054710 B = 0.008832 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.665489 B = 3169.707017 C = 3438.416529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.011 3.989 4 H 0.055 0.945 5 C -0.140 4.140 6 C -0.371 4.371 7 C -0.071 4.071 8 C -0.357 4.357 9 C 0.034 3.966 10 C -0.395 4.395 11 H 0.090 0.910 12 C 0.052 3.948 13 N -0.789 5.789 14 Si 0.932 3.068 15 H -0.266 1.266 16 H -0.274 1.274 17 H -0.260 1.260 18 S 0.134 5.866 19 H 0.048 0.952 20 H 0.052 0.948 21 H 0.045 0.955 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 -0.614 -0.616 4.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.010 4.010 4 H 0.073 0.927 5 C -0.198 4.198 6 C -0.487 4.487 7 C -0.100 4.100 8 C -0.382 4.382 9 C -0.086 4.086 10 C -0.431 4.431 11 H 0.108 0.892 12 C -0.167 4.167 13 N -0.417 5.417 14 Si 0.756 3.244 15 H -0.191 1.191 16 H -0.199 1.199 17 H -0.184 1.184 18 S 0.394 5.606 19 H 0.067 0.933 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.782 -1.508 -2.105 5.438 hybrid contribution 1.026 0.701 1.241 1.756 sum -3.757 -0.807 -0.864 3.938 Atomic orbital electron populations 1.21854 0.97110 1.00637 1.01244 1.21615 0.94027 0.97695 1.01994 1.19145 0.90949 0.94352 0.96509 0.92653 1.21896 0.99055 1.00594 0.98246 1.24310 0.97324 1.20079 1.06981 1.19217 0.93764 0.99889 0.97131 1.19696 0.94146 1.19682 1.04720 1.21837 0.96260 0.95628 0.94894 1.19130 0.92030 1.26569 1.05363 0.89157 1.26150 1.00975 0.94223 0.95390 1.68870 1.34340 1.26761 1.11701 0.85881 0.80462 0.79839 0.78257 1.19141 1.19873 1.18354 1.84330 0.94442 1.56309 1.25558 0.93330 0.92879 0.93545 0.92167 0.92355 0.92848 0.93856 0.93239 0.89556 0.88639 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.77 15 2 C -0.12 -2.04 5.30 -26.74 -0.14 -2.18 15 3 C 0.01 0.21 2.76 -91.77 -0.25 -0.04 15 4 H 0.06 1.04 8.08 -51.93 -0.42 0.62 15 5 C -0.14 -2.50 8.87 37.16 0.33 -2.17 15 6 C -0.37 -8.79 5.12 -35.61 -0.18 -8.97 15 7 C -0.07 -1.75 9.96 -41.41 -0.41 -2.17 15 8 C -0.36 -9.52 10.20 -40.08 -0.41 -9.93 15 9 C 0.03 0.94 6.19 -38.94 -0.24 0.70 15 10 C -0.40 -10.51 9.29 -38.27 -0.36 -10.86 15 11 H 0.09 2.29 7.85 -52.49 -0.41 1.88 15 12 C 0.05 1.27 5.50 -17.28 -0.09 1.18 15 13 N -0.79 -19.77 10.65 55.56 0.59 -19.18 15 14 Si 0.93 18.23 29.56 -169.99 -5.03 13.20 15 15 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 16 H -0.27 -5.20 7.11 56.52 0.40 -4.79 15 17 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 18 S 0.13 3.43 19.91 -107.50 -2.14 1.29 15 19 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 20 H 0.05 0.71 6.56 -51.93 -0.34 0.36 15 21 H 0.05 0.59 8.14 -51.92 -0.42 0.16 15 22 H 0.06 1.12 8.14 -51.93 -0.42 0.69 15 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.05 0.99 7.98 -51.93 -0.41 0.57 15 25 H 0.04 0.65 6.56 -51.93 -0.34 0.30 15 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.09 1.95 8.06 -52.49 -0.42 1.53 15 28 H 0.10 2.44 8.06 -52.49 -0.42 2.02 15 29 H 0.29 6.63 8.30 -40.82 -0.34 6.29 15 LS Contribution 256.46 15.07 3.86 3.86 Total: -1.00 -27.28 256.46 -8.13 -35.41 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.02 Total: 1.63 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: -1.40 Total: -36.22 kcal Atomic # 7 Polarization: -19.77 SS G_CDS: 0.59 Total: -19.18 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.14 Total: 1.29 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.28 -8.13 -35.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214226666.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.127 kcal (2) G-P(sol) polarization free energy of solvation -27.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds