Wall clock time and date at job start Mon Mar 30 2020 02:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47216 * 2 1 4 4 H 1.09005 * 109.47265 * 55.00412 * 3 2 1 5 5 C 1.52999 * 109.47361 * 295.00343 * 3 2 1 6 6 C 1.50708 * 109.47179 * 175.00373 * 3 2 1 7 7 C 1.34537 * 124.92503 * 240.00649 * 6 3 2 8 8 C 1.36804 * 115.34122 * 180.23564 * 7 6 3 9 9 C 1.38292 * 114.19821 * 359.49971 * 8 7 6 10 10 C 1.39910 * 125.40685 * 180.21018 * 9 8 7 11 11 H 1.07996 * 120.00233 * 0.27005 * 10 9 8 12 12 C 1.40071 * 119.99708 * 180.27619 * 10 9 8 13 13 N 1.30865 * 120.00133 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99581 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47252 * 90.00103 * 14 12 10 16 16 H 1.48504 * 109.46689 * 209.99861 * 14 12 10 17 17 H 1.48496 * 109.47127 * 329.99433 * 14 12 10 18 18 S 1.75792 * 124.92675 * 59.95559 * 6 3 2 19 19 H 1.09001 * 109.47088 * 299.99430 * 1 2 3 20 20 H 1.08998 * 109.47126 * 59.99494 * 1 2 3 21 21 H 1.09010 * 109.47319 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46555 * 240.00022 * 2 1 3 23 23 H 1.08998 * 109.47126 * 120.00506 * 2 1 3 24 24 H 1.09004 * 109.46729 * 299.99754 * 5 3 2 25 25 H 1.08998 * 109.47005 * 59.99981 * 5 3 2 26 26 H 1.09001 * 109.47008 * 180.02562 * 5 3 2 27 27 H 1.08002 * 122.32725 * 359.95551 * 7 6 3 28 28 H 1.08001 * 122.90026 * 179.69092 * 8 7 6 29 29 H 0.97007 * 120.00267 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5420 1.4442 0.1237 7 6 4.2318 2.0240 1.1227 8 6 5.5925 1.9104 1.0376 9 6 6.0344 1.2029 -0.0654 10 6 7.3729 0.9429 -0.3787 11 1 8.1588 1.3025 0.2689 12 6 7.6937 0.2165 -1.5326 13 7 6.7414 -0.2195 -2.3172 14 14 9.4809 -0.1299 -1.9513 15 1 9.8955 -1.4128 -1.3288 16 1 9.6349 -0.2225 -3.4254 17 1 10.3330 0.9702 -1.4328 18 16 4.6466 0.6879 -1.0156 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8932 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.0698 1.5875 -2.1491 25 1 0.5489 2.1253 -1.3968 26 1 1.9990 3.1541 -1.3074 27 1 3.7454 2.5469 1.9329 28 1 6.2635 2.3340 1.7703 29 1 6.9635 -0.7230 -3.1161 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214226666.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:30 Heat of formation + Delta-G solvation = -30.529430 kcal Electronic energy + Delta-G solvation = -11604.129903 eV Core-core repulsion = 9616.431626 eV Total energy + Delta-G solvation = -1987.698277 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.32690 -36.80525 -35.32306 -31.29175 -29.92302 -27.01252 -24.92522 -23.35826 -21.18409 -20.07299 -19.17480 -16.96432 -16.46472 -15.69567 -15.48727 -14.74533 -14.20608 -14.08661 -13.84823 -13.45868 -13.14791 -12.95544 -12.82995 -12.56850 -12.39715 -12.01571 -11.84092 -11.58709 -11.50413 -11.30817 -11.16600 -10.70800 -9.19506 -8.76194 -8.61972 -6.40609 0.83558 1.36244 1.50519 1.53428 1.74037 2.09312 2.29269 2.29997 3.14063 4.10945 4.19245 4.30810 4.65012 4.72953 4.77994 4.84458 5.01250 5.05868 5.11325 5.18410 5.23574 5.31562 5.40129 5.56299 5.62276 5.72151 5.95269 6.19587 6.31663 6.68516 6.70373 8.10173 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.054710 B = 0.008832 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.665489 B = 3169.707017 C = 3438.416529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.006 3.994 4 H 0.068 0.932 5 C -0.135 4.135 6 C -0.357 4.357 7 C -0.092 4.092 8 C -0.385 4.385 9 C -0.002 4.002 10 C -0.431 4.431 11 H 0.090 0.910 12 C 0.015 3.985 13 N -0.812 5.812 14 Si 1.008 2.992 15 H -0.258 1.258 16 H -0.260 1.260 17 H -0.257 1.257 18 S 0.119 5.881 19 H 0.059 0.941 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.046 0.954 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.042 0.958 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 -0.971 -1.240 5.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.014 4.014 4 H 0.086 0.914 5 C -0.193 4.193 6 C -0.473 4.473 7 C -0.120 4.120 8 C -0.410 4.410 9 C -0.122 4.122 10 C -0.466 4.466 11 H 0.108 0.892 12 C -0.202 4.202 13 N -0.439 5.439 14 Si 0.827 3.173 15 H -0.183 1.183 16 H -0.184 1.184 17 H -0.181 1.181 18 S 0.378 5.622 19 H 0.078 0.922 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.125 0.875 28 H 0.111 0.889 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.487 -1.861 -2.722 6.402 hybrid contribution 1.168 0.811 1.440 2.024 sum -4.320 -1.050 -1.282 4.627 Atomic orbital electron populations 1.21786 0.93775 1.02105 1.02382 1.21546 0.96917 0.95906 1.00682 1.19329 0.87977 0.96095 0.98045 0.91355 1.21837 1.01279 0.99618 0.96517 1.24861 0.99498 1.17628 1.05313 1.19446 0.93320 1.00898 0.98379 1.19908 0.95251 1.20766 1.05056 1.22254 0.97538 0.96629 0.95796 1.19451 0.91907 1.28277 1.06949 0.89168 1.27129 1.05852 0.92975 0.94289 1.68915 1.36536 1.26407 1.12070 0.84771 0.74150 0.79762 0.78607 1.18272 1.18363 1.18094 1.84176 0.94652 1.57045 1.26374 0.92161 0.91708 0.92037 0.93549 0.93713 0.94136 0.90336 0.93879 0.87524 0.88888 0.88186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.67 71.98 0.70 -2.86 15 2 C -0.11 -3.80 5.30 30.59 0.16 -3.64 15 3 C 0.01 0.22 2.76 -11.54 -0.03 0.19 15 4 H 0.07 2.40 8.08 -2.38 -0.02 2.38 15 5 C -0.14 -4.52 8.87 71.98 0.64 -3.88 15 6 C -0.36 -16.90 5.12 24.84 0.13 -16.77 15 7 C -0.09 -4.59 9.96 21.09 0.21 -4.38 15 8 C -0.38 -21.13 10.20 21.95 0.22 -20.90 15 9 C 0.00 -0.13 6.19 22.69 0.14 0.01 15 10 C -0.43 -23.48 9.29 23.12 0.21 -23.27 15 11 H 0.09 4.72 7.85 -2.91 -0.02 4.70 15 12 C 0.01 0.71 5.50 85.28 0.47 1.18 15 13 N -0.81 -40.74 10.65 21.86 0.23 -40.51 15 14 Si 1.01 36.68 29.56 68.60 2.03 38.71 15 15 H -0.26 -9.03 7.11 99.48 0.71 -8.33 15 16 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 17 H -0.26 -9.19 7.11 99.48 0.71 -8.48 15 18 S 0.12 6.17 19.91 -56.49 -1.12 5.05 15 19 H 0.06 1.37 8.14 -2.39 -0.02 1.35 15 20 H 0.06 1.46 6.56 -2.39 -0.02 1.45 15 21 H 0.06 1.36 8.14 -2.38 -0.02 1.34 15 22 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 23 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 24 H 0.04 1.44 7.98 -2.38 -0.02 1.42 15 25 H 0.08 2.07 6.56 -2.39 -0.02 2.06 15 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 27 H 0.11 4.78 8.06 -2.91 -0.02 4.76 15 28 H 0.09 4.96 8.06 -2.91 -0.02 4.93 15 29 H 0.31 13.59 8.30 -92.70 -0.77 12.82 15 Total: -1.00 -59.19 256.46 5.10 -54.08 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 1.12 Total: 17.00 kcal Atomic # 6 Polarization: -77.18 SS G_CDS: 2.85 Total: -74.33 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.23 Total: -40.51 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 2.03 Total: 38.71 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -1.12 Total: 5.05 kcal Total: -59.19 5.10 -54.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214226666.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.555 kcal (2) G-P(sol) polarization free energy of solvation -59.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds