Wall clock time and date at job start Mon Mar 30 2020 02:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99989 * 2 1 4 4 H 1.48494 * 109.47145 * 274.99189 * 3 2 1 5 5 H 1.48499 * 109.46888 * 34.99433 * 3 2 1 6 6 H 1.48500 * 109.47291 * 154.99183 * 3 2 1 7 7 C 1.37885 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99465 * 189.68456 * 7 2 1 9 9 C 1.50699 * 119.99992 * 9.69214 * 7 2 1 10 10 H 1.08996 * 109.81001 * 305.92831 * 9 7 2 11 11 C 1.53042 * 109.66017 * 66.45585 * 9 7 2 12 12 C 1.50076 * 110.13433 * 70.22236 * 11 9 7 13 13 C 1.29432 * 124.07747 * 17.16990 * 12 11 9 14 14 C 1.50068 * 124.08034 * 359.50626 * 13 12 11 15 15 C 1.53030 * 110.14365 * 17.13097 * 14 13 12 16 16 H 1.08993 * 109.64378 * 70.46214 * 15 14 13 17 17 C 1.53002 * 109.64252 * 190.88394 * 15 14 13 18 18 C 1.50709 * 109.46890 * 294.99716 * 17 15 14 19 19 O 1.20824 * 119.99740 * 0.02562 * 18 17 15 20 20 O 1.34227 * 119.99967 * 179.97438 * 18 17 15 21 21 H 0.96998 * 120.00577 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.35018 * 310.02793 * 11 9 7 23 23 H 1.08997 * 109.37074 * 190.43300 * 11 9 7 24 24 H 1.07996 * 117.95863 * 197.14055 * 12 11 9 25 25 H 1.08007 * 117.96356 * 179.48413 * 13 12 11 26 26 H 1.08998 * 109.36005 * 256.92760 * 14 13 12 27 27 H 1.09001 * 109.25158 * 137.26541 * 14 13 12 28 28 H 1.08997 * 109.47480 * 54.99922 * 17 15 14 29 29 H 1.08997 * 109.46900 * 175.00262 * 17 15 14 30 30 H 0.96695 * 116.99925 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5033 2.6198 0.8029 6 1 3.5955 1.4121 0.5919 7 6 2.0046 -1.1941 0.0005 8 1 3.0731 -1.2006 0.1579 9 6 1.2672 -2.4900 -0.2186 10 1 0.4480 -2.5742 0.4954 11 6 0.7129 -2.5323 -1.6445 12 6 1.8342 -2.6836 -2.6304 13 6 3.0263 -3.0793 -2.3178 14 6 3.4568 -3.4320 -0.9242 15 6 2.2318 -3.6690 -0.0382 16 1 1.7408 -4.5965 -0.3324 17 6 2.6658 -3.7589 1.4262 18 6 3.5356 -4.9745 1.6186 19 8 3.7833 -5.6946 0.6806 20 8 4.0359 -5.2566 2.8318 21 1 -0.4851 0.8400 0.0004 22 1 0.1736 -1.6076 -1.8498 23 1 0.0298 -3.3760 -1.7419 24 1 1.6339 -2.4480 -3.6651 25 1 3.7566 -3.1611 -3.1093 26 1 4.0487 -2.6151 -0.5112 27 1 4.0622 -4.3379 -0.9535 28 1 3.2274 -2.8641 1.6944 29 1 1.7841 -3.8387 2.0621 30 1 4.5879 -6.0469 2.9061 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222473901.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:29 Heat of formation + Delta-G solvation = -112.610108 kcal Electronic energy + Delta-G solvation = -14228.156282 eV Core-core repulsion = 11794.145848 eV Total energy + Delta-G solvation = -2434.010433 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32145 -39.41035 -36.96323 -34.48887 -33.61548 -31.06321 -28.82090 -26.72164 -23.98928 -22.65055 -21.03954 -19.47152 -18.91353 -17.29980 -17.11893 -16.69359 -16.51931 -16.23163 -14.97152 -14.63141 -14.14738 -13.79359 -13.61348 -13.36483 -12.91453 -12.78063 -12.66529 -12.56332 -12.33493 -12.09558 -11.99717 -11.48440 -10.91580 -10.67663 -10.61242 -10.28946 -9.51229 -8.03628 -6.06617 1.33713 1.43450 1.47518 1.54249 1.73694 2.30876 2.50114 3.29749 3.98858 4.11070 4.33668 4.46820 4.62127 4.78017 4.87500 4.90018 5.01600 5.11652 5.13011 5.35130 5.37525 5.49007 5.70364 5.75252 5.76542 6.02487 6.17582 6.42226 6.49800 7.01725 7.14537 7.58322 9.05936 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.031116 B = 0.011232 C = 0.009678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.632612 B = 2492.236182 C = 2892.525567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.935 3.065 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.499 4.499 8 H 0.061 0.939 9 C 0.050 3.950 10 H 0.010 0.990 11 C -0.078 4.078 12 C -0.147 4.147 13 C -0.161 4.161 14 C -0.072 4.072 15 C -0.060 4.060 16 H 0.052 0.948 17 C -0.099 4.099 18 C 0.488 3.512 19 O -0.543 6.543 20 O -0.514 6.514 21 H 0.257 0.743 22 H 0.050 0.950 23 H 0.042 0.958 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.366 -7.100 2.119 9.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.181 4.181 3 Si 0.762 3.238 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.032 3.968 10 H 0.028 0.972 11 C -0.116 4.116 12 C -0.165 4.165 13 C -0.179 4.179 14 C -0.108 4.108 15 C -0.078 4.078 16 H 0.070 0.930 17 C -0.137 4.137 18 C 0.332 3.668 19 O -0.434 6.434 20 O -0.328 6.328 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 6.058 -6.829 1.846 9.314 hybrid contribution 0.390 0.660 -0.162 0.784 sum 6.447 -6.169 1.684 9.081 Atomic orbital electron populations 1.70073 1.07115 1.26767 1.52185 1.25565 0.95273 1.01681 0.95597 0.85889 0.79362 0.80978 0.77527 1.21208 1.21653 1.18932 1.21391 0.94076 0.91266 1.46963 0.92101 1.18736 0.93449 0.92307 0.92354 0.97193 1.20374 0.95700 0.98955 0.96572 1.22056 0.96149 0.99644 0.98636 1.21997 0.96652 1.01673 0.97614 1.20422 0.97300 1.00125 0.92974 1.20947 0.96886 0.98020 0.91995 0.92969 1.21384 0.99266 0.93735 0.99274 1.23772 0.77354 0.86050 0.79607 1.90645 1.58701 1.51219 1.42848 1.84544 1.64084 1.50579 1.33555 0.93433 0.93104 0.94009 0.88683 0.87527 0.91786 0.91271 0.87287 0.87464 0.71521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.04 12.29 21.45 0.26 -51.78 16 2 C 0.02 0.90 5.11 84.66 0.43 1.33 16 3 Si 0.94 42.65 29.55 68.60 2.03 44.68 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.50 -25.30 6.74 25.60 0.17 -25.13 16 8 H 0.06 3.02 5.80 -2.91 -0.02 3.00 16 9 C 0.05 2.36 1.96 -11.40 -0.02 2.34 16 10 H 0.01 0.52 8.08 -2.39 -0.02 0.50 16 11 C -0.08 -3.63 5.49 29.67 0.16 -3.47 16 12 C -0.15 -6.06 9.53 27.05 0.26 -5.80 16 13 C -0.16 -6.23 9.61 27.05 0.26 -5.97 16 14 C -0.07 -2.75 4.51 29.66 0.13 -2.61 16 15 C -0.06 -2.37 1.67 -10.65 -0.02 -2.39 16 16 H 0.05 2.09 7.96 -2.39 -0.02 2.07 16 17 C -0.10 -3.37 5.07 29.85 0.15 -3.22 16 18 C 0.49 14.82 8.08 71.24 0.58 15.40 16 19 O -0.54 -19.07 14.79 21.97 0.33 -18.75 16 20 O -0.51 -11.87 13.42 -51.39 -0.69 -12.56 16 21 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 22 H 0.05 2.65 6.83 -2.39 -0.02 2.63 16 23 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.10 3.54 8.06 -2.91 -0.02 3.52 16 25 H 0.11 3.55 8.06 -2.91 -0.02 3.53 16 26 H 0.06 2.53 6.43 -2.39 -0.02 2.52 16 27 H 0.07 2.56 6.23 -2.39 -0.01 2.55 16 28 H 0.11 3.79 7.36 -2.39 -0.02 3.77 16 29 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 30 H 0.42 5.58 9.10 -74.06 -0.67 4.90 16 Total: -1.00 -60.75 247.66 4.50 -56.25 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.47 Total: 11.68 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 2.11 Total: -29.52 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.26 Total: -51.78 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.36 Total: -31.31 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -60.75 4.50 -56.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222473901.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.360 kcal (2) G-P(sol) polarization free energy of solvation -60.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds