Wall clock time and date at job start Mon Mar 30 2020 02:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99890 * 2 1 4 4 C 1.50700 * 109.47085 * 269.99872 * 3 2 1 5 5 H 1.08001 * 119.99713 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99957 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00143 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99929 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47120 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47002 * 119.99754 * 8 6 4 11 11 H 1.48497 * 109.47196 * 239.99814 * 8 6 4 12 12 C 1.39186 * 119.99842 * 179.97438 * 2 1 3 13 13 C 1.39567 * 120.84700 * 179.97438 * 12 2 1 14 14 C 1.37798 * 119.12907 * 180.02562 * 13 12 2 15 15 N 1.32070 * 120.87319 * 0.02562 * 14 13 12 16 16 C 1.32160 * 121.86846 * 359.69325 * 15 14 13 17 17 F 1.35100 * 119.60619 * 180.30900 * 16 15 14 18 18 C 1.38242 * 120.78070 * 0.57907 * 16 15 14 19 19 H 1.09007 * 109.47338 * 269.99854 * 1 2 3 20 20 H 1.08994 * 109.47300 * 30.00402 * 1 2 3 21 21 H 1.08997 * 109.47019 * 150.00334 * 1 2 3 22 22 H 1.08997 * 109.47213 * 30.00084 * 3 2 1 23 23 H 1.09006 * 109.46605 * 149.99768 * 3 2 1 24 24 H 0.96996 * 120.00244 * 180.02562 * 7 6 4 25 25 H 1.08000 * 120.43729 * 359.97438 * 13 12 2 26 26 H 1.07991 * 119.56840 * 179.97438 * 14 13 12 27 27 H 1.08002 * 120.48021 * 179.73625 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5550 3.6170 -0.6732 8 14 3.4388 3.4162 -3.4339 9 1 2.8607 2.4163 -4.3673 10 1 2.8017 4.7371 -3.6676 11 1 4.9014 3.5240 -3.6669 12 6 2.1609 -1.2054 0.0005 13 6 3.5564 -1.2261 0.0000 14 6 4.2093 -2.4396 0.0000 15 7 3.5321 -3.5735 0.0000 16 6 2.2108 -3.5970 0.0060 17 9 1.5644 -4.7834 0.0121 18 6 1.4822 -2.4222 0.0006 19 1 -0.3634 0.0000 1.0277 20 1 -0.3633 0.8899 -0.5139 21 1 -0.3633 -0.8900 -0.5138 22 1 1.6084 2.0283 0.5138 23 1 3.1499 1.1383 0.5139 24 1 4.0318 4.4429 -0.8504 25 1 4.1173 -0.3031 -0.0012 26 1 5.2889 -2.4638 -0.0008 27 1 0.4024 -2.4472 0.0012 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227639043.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:23 Heat of formation + Delta-G solvation = -3.880996 kcal Electronic energy + Delta-G solvation = -13372.112557 eV Core-core repulsion = 10851.649418 eV Total energy + Delta-G solvation = -2520.463139 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.55307 -39.55011 -36.38059 -32.94578 -30.64252 -30.43968 -27.99808 -25.62380 -23.37703 -22.58948 -20.64540 -17.45913 -16.76052 -16.55869 -15.80466 -15.55411 -14.85890 -14.46318 -14.00465 -13.76445 -13.48672 -12.83681 -12.46887 -12.30385 -11.80643 -11.65976 -11.21046 -10.96240 -10.61947 -10.35940 -10.17091 -9.49112 -9.14044 -8.64620 -8.52227 -7.02712 -6.22088 -4.32585 1.54827 2.00025 3.17887 3.26747 3.30901 3.73817 4.20052 4.25340 4.30586 5.07294 5.10910 5.41413 5.61288 5.63290 5.83172 5.90504 6.15022 6.18398 6.33140 6.57187 6.85576 7.10708 7.17925 7.64816 7.90691 7.98634 8.08346 8.30684 8.75300 9.35303 10.81911 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.041955 B = 0.008331 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.227944 B = 3360.043680 C = 3594.767289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.594 5.594 3 C 0.244 3.756 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.290 3.710 13 C -0.245 4.245 14 C 0.158 3.842 15 N -0.575 5.575 16 C 0.334 3.666 17 F -0.126 7.126 18 C -0.297 4.297 19 H 0.044 0.956 20 H 0.074 0.926 21 H 0.059 0.941 22 H 0.037 0.963 23 H 0.040 0.960 24 H 0.266 0.734 25 H 0.149 0.851 26 H 0.158 0.842 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.014 -6.741 1.624 7.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.298 5.298 3 C 0.125 3.875 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.173 3.827 13 C -0.270 4.270 14 C 0.005 3.995 15 N -0.295 5.295 16 C 0.180 3.820 17 F -0.106 7.106 18 C -0.325 4.325 19 H 0.063 0.937 20 H 0.093 0.907 21 H 0.078 0.922 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.167 0.833 26 H 0.175 0.825 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.632 -7.129 1.669 7.780 hybrid contribution -0.430 1.032 -1.007 1.505 sum -3.061 -6.097 0.661 6.854 Atomic orbital electron populations 1.21629 0.80612 1.02621 1.00452 1.47194 1.05113 1.04497 1.72952 1.19463 0.92279 0.78188 0.97576 1.21543 1.37029 1.06804 0.92287 0.92057 1.24951 0.95143 0.96130 0.97642 1.69925 1.37926 1.14349 1.30851 0.86427 0.78170 0.78532 0.84288 1.19686 1.20841 1.20689 1.17870 0.91415 0.85930 0.87520 1.21876 0.93250 1.00618 1.11280 1.22053 0.99272 0.85763 0.92404 1.66976 1.06959 1.32585 1.22979 1.17713 0.87603 0.79988 0.96666 1.91538 1.79888 1.45606 1.93520 1.21051 1.01016 0.90706 1.19751 0.93745 0.90689 0.92244 0.94517 0.94192 0.92477 0.83313 0.82490 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.22 59.85 0.61 2.06 15 2 N -0.59 -11.84 2.98 -180.82 -0.54 -12.38 15 3 C 0.24 5.70 4.94 -5.20 -0.03 5.68 15 4 C -0.54 -13.88 9.39 -34.44 -0.32 -14.20 15 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 15 6 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 7 N -0.89 -24.39 13.29 55.43 0.74 -23.65 15 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 15 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 12 C 0.29 5.60 6.57 -83.62 -0.55 5.05 15 13 C -0.24 -4.61 9.26 -39.25 -0.36 -4.97 15 14 C 0.16 2.70 11.17 -17.61 -0.20 2.51 15 15 N -0.57 -10.69 10.37 -13.70 -0.14 -10.83 15 16 C 0.33 6.07 8.40 -17.41 -0.15 5.92 15 17 F -0.13 -2.18 17.29 2.25 0.04 -2.14 15 18 C -0.30 -5.23 9.24 -39.17 -0.36 -5.59 15 19 H 0.04 0.63 8.14 -51.92 -0.42 0.21 15 20 H 0.07 1.22 8.07 -51.93 -0.42 0.80 15 21 H 0.06 0.84 6.26 -51.93 -0.33 0.52 15 22 H 0.04 0.90 8.07 -51.93 -0.42 0.48 15 23 H 0.04 0.98 6.26 -51.93 -0.32 0.65 15 24 H 0.27 6.88 8.31 -40.82 -0.34 6.54 15 25 H 0.15 2.94 6.28 -52.49 -0.33 2.61 15 26 H 0.16 2.15 8.06 -52.49 -0.42 1.73 15 27 H 0.14 2.08 6.27 -52.49 -0.33 1.75 15 LS Contribution 242.96 15.07 3.66 3.66 Total: -1.00 -27.84 242.96 -5.25 -33.09 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -2.54 Total: -1.22 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -1.45 Total: -1.96 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.06 Total: -46.86 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.84 -5.25 -33.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227639043.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.213 kcal (2) G-P(sol) polarization free energy of solvation -27.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds