Wall clock time and date at job start Mon Mar 30 2020 02:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99890 * 2 1 4 4 C 1.50700 * 109.47085 * 269.99872 * 3 2 1 5 5 H 1.08001 * 119.99713 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99957 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00143 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99929 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47120 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47002 * 119.99754 * 8 6 4 11 11 H 1.48497 * 109.47196 * 239.99814 * 8 6 4 12 12 C 1.39186 * 119.99842 * 179.97438 * 2 1 3 13 13 C 1.39567 * 120.84700 * 179.97438 * 12 2 1 14 14 C 1.37798 * 119.12907 * 180.02562 * 13 12 2 15 15 N 1.32070 * 120.87319 * 0.02562 * 14 13 12 16 16 C 1.32160 * 121.86846 * 359.69325 * 15 14 13 17 17 F 1.35100 * 119.60619 * 180.30900 * 16 15 14 18 18 C 1.38242 * 120.78070 * 0.57907 * 16 15 14 19 19 H 1.09007 * 109.47338 * 269.99854 * 1 2 3 20 20 H 1.08994 * 109.47300 * 30.00402 * 1 2 3 21 21 H 1.08997 * 109.47019 * 150.00334 * 1 2 3 22 22 H 1.08997 * 109.47213 * 30.00084 * 3 2 1 23 23 H 1.09006 * 109.46605 * 149.99768 * 3 2 1 24 24 H 0.96996 * 120.00244 * 180.02562 * 7 6 4 25 25 H 1.08000 * 120.43729 * 359.97438 * 13 12 2 26 26 H 1.07991 * 119.56840 * 179.97438 * 14 13 12 27 27 H 1.08002 * 120.48021 * 179.73625 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5550 3.6170 -0.6732 8 14 3.4388 3.4162 -3.4339 9 1 2.8607 2.4163 -4.3673 10 1 2.8017 4.7371 -3.6676 11 1 4.9014 3.5240 -3.6669 12 6 2.1609 -1.2054 0.0005 13 6 3.5564 -1.2261 0.0000 14 6 4.2093 -2.4396 0.0000 15 7 3.5321 -3.5735 0.0000 16 6 2.2108 -3.5970 0.0060 17 9 1.5644 -4.7834 0.0121 18 6 1.4822 -2.4222 0.0006 19 1 -0.3634 0.0000 1.0277 20 1 -0.3633 0.8899 -0.5139 21 1 -0.3633 -0.8900 -0.5138 22 1 1.6084 2.0283 0.5138 23 1 3.1499 1.1383 0.5139 24 1 4.0318 4.4429 -0.8504 25 1 4.1173 -0.3031 -0.0012 26 1 5.2889 -2.4638 -0.0008 27 1 0.4024 -2.4472 0.0012 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227639043.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:23 Heat of formation + Delta-G solvation = -20.309966 kcal Electronic energy + Delta-G solvation = -13372.824971 eV Core-core repulsion = 10851.649418 eV Total energy + Delta-G solvation = -2521.175553 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.94022 -40.99443 -37.91297 -34.88535 -32.16832 -31.86026 -29.69877 -27.17793 -25.11821 -24.03258 -22.18411 -18.94988 -18.61835 -18.09810 -17.26196 -16.96199 -16.66225 -15.88930 -15.56851 -15.29112 -14.87209 -14.31254 -14.11004 -13.80236 -13.48390 -13.12460 -12.96294 -12.69287 -12.37296 -11.97107 -11.94486 -11.26561 -10.65131 -10.57441 -9.93223 -8.63936 -8.14406 -6.38960 0.13664 0.54426 1.38346 1.41814 1.52133 2.21590 2.41273 2.81340 2.83941 3.06470 3.76211 4.03537 4.16504 4.29820 4.52839 4.64416 4.76493 4.84970 4.90805 5.02385 5.16806 5.25375 5.64108 5.75008 6.01459 6.26926 6.56814 6.76143 6.89300 7.32862 8.81764 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.041955 B = 0.008331 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.227944 B = 3360.043680 C = 3594.767289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.605 5.605 3 C 0.259 3.741 4 C -0.545 4.545 5 H 0.051 0.949 6 C 0.020 3.980 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.274 3.726 13 C -0.261 4.261 14 C 0.169 3.831 15 N -0.587 5.587 16 C 0.327 3.673 17 F -0.121 7.121 18 C -0.286 4.286 19 H 0.064 0.936 20 H 0.068 0.932 21 H 0.081 0.919 22 H 0.021 0.979 23 H 0.024 0.976 24 H 0.268 0.732 25 H 0.133 0.867 26 H 0.191 0.809 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 -7.522 1.043 8.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.309 5.309 3 C 0.138 3.862 4 C -0.584 4.584 5 H 0.069 0.931 6 C -0.181 4.181 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.157 3.843 13 C -0.287 4.287 14 C 0.016 3.984 15 N -0.307 5.307 16 C 0.174 3.826 17 F -0.100 7.100 18 C -0.314 4.314 19 H 0.083 0.917 20 H 0.086 0.914 21 H 0.099 0.901 22 H 0.039 0.961 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.151 0.849 26 H 0.207 0.793 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.974 -7.940 1.091 8.549 hybrid contribution -0.331 1.206 -0.794 1.481 sum -3.305 -6.734 0.298 7.508 Atomic orbital electron populations 1.21819 0.78404 1.03352 1.01994 1.47088 1.06441 1.03522 1.73867 1.19021 0.91701 0.79503 0.95982 1.21736 1.36786 1.06760 0.93101 0.93061 1.25675 0.94976 0.96251 1.01149 1.70012 1.38681 1.14816 1.32645 0.85487 0.78053 0.78095 0.79907 1.19663 1.20268 1.20280 1.18090 0.91778 0.86253 0.88148 1.21895 0.93452 1.00761 1.12551 1.22493 1.00671 0.84642 0.90620 1.67059 1.07362 1.33038 1.23270 1.17862 0.87714 0.80370 0.96647 1.91552 1.79760 1.45245 1.93441 1.21160 1.02128 0.89628 1.18477 0.91743 0.91369 0.90096 0.96075 0.95805 0.92259 0.84877 0.79252 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.64 10.22 127.77 1.31 3.95 15 2 N -0.61 -23.75 2.98 -725.98 -2.16 -25.91 15 3 C 0.26 12.26 4.94 85.63 0.42 12.68 15 4 C -0.55 -28.27 9.39 25.60 0.24 -28.03 15 5 H 0.05 2.71 7.81 -2.91 -0.02 2.69 15 6 C 0.02 1.03 5.46 84.65 0.46 1.49 15 7 N -0.92 -50.74 13.29 21.45 0.28 -50.45 15 8 Si 0.96 41.69 29.54 68.60 2.03 43.72 15 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 10 H -0.28 -11.74 7.11 99.48 0.71 -11.04 15 11 H -0.28 -11.81 7.11 99.48 0.71 -11.11 15 12 C 0.27 10.29 6.57 38.56 0.25 10.54 15 13 C -0.26 -9.70 9.26 22.49 0.21 -9.49 15 14 C 0.17 5.50 11.17 84.55 0.94 6.44 15 15 N -0.59 -20.67 10.37 -197.24 -2.05 -22.72 15 16 C 0.33 11.21 8.40 84.64 0.71 11.92 15 17 F -0.12 -3.90 17.29 44.97 0.78 -3.12 15 18 C -0.29 -9.46 9.24 22.53 0.21 -9.26 15 19 H 0.06 1.70 8.14 -2.38 -0.02 1.68 15 20 H 0.07 2.15 8.07 -2.39 -0.02 2.13 15 21 H 0.08 2.09 6.26 -2.39 -0.01 2.08 15 22 H 0.02 1.06 8.07 -2.39 -0.02 1.04 15 23 H 0.02 1.20 6.26 -2.38 -0.01 1.19 15 24 H 0.27 13.93 8.31 -92.71 -0.77 13.16 15 25 H 0.13 5.37 6.28 -2.91 -0.02 5.35 15 26 H 0.19 4.75 8.06 -2.92 -0.02 4.72 15 27 H 0.16 4.38 6.27 -2.91 -0.02 4.37 15 Total: -1.00 -57.79 242.96 4.82 -52.97 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 1.18 Total: 5.26 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 4.76 Total: 0.25 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -3.92 Total: -99.08 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -57.79 4.82 -52.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227639043.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.660 kcal (2) G-P(sol) polarization free energy of solvation -57.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds