Wall clock time and date at job start Mon Mar 30 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38180 * 119.99842 * 2 1 4 4 C 1.38211 * 120.07595 * 180.22849 * 3 2 1 5 5 C 1.38512 * 120.08589 * 359.79186 * 4 3 2 6 6 F 1.35108 * 119.99716 * 179.97438 * 5 4 3 7 7 C 1.38336 * 120.00773 * 359.95115 * 5 4 3 8 8 C 1.38712 * 119.92159 * 0.02562 * 7 5 4 9 9 O 1.35893 * 120.04818 * 179.97438 * 8 7 5 10 10 C 1.42906 * 116.99564 * 0.02562 * 9 8 7 11 11 C 1.50706 * 109.46699 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.71972 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99350 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47353 * 89.99430 * 15 13 11 17 17 H 1.48494 * 109.47031 * 209.99977 * 15 13 11 18 18 H 1.48504 * 109.46680 * 329.99678 * 15 13 11 19 19 H 1.08990 * 109.47474 * 270.25362 * 1 2 3 20 20 H 1.08997 * 109.46812 * 30.25922 * 1 2 3 21 21 H 1.09003 * 109.46391 * 150.25476 * 1 2 3 22 22 H 1.08001 * 119.96314 * 359.97438 * 3 2 1 23 23 H 1.08007 * 119.95430 * 179.76462 * 4 3 2 24 24 H 1.08003 * 120.04025 * 180.02562 * 7 5 4 25 25 H 1.09000 * 109.47490 * 59.99632 * 10 9 8 26 26 H 1.09001 * 109.47232 * 299.98986 * 10 9 8 27 27 H 0.97005 * 119.99656 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1967 0.0000 4 6 3.5800 1.1986 -0.0048 5 6 4.2760 0.0010 -0.0052 6 9 5.6270 0.0049 -0.0104 7 6 3.5879 -1.1991 0.0002 8 6 2.2008 -1.2013 0.0054 9 8 1.5222 -2.3787 0.0102 10 6 2.3016 -3.5766 0.0100 11 6 1.3845 -4.7724 0.0162 12 1 0.3138 -4.6318 0.0245 13 6 1.9126 -6.0461 0.0166 14 7 1.1123 -7.0897 0.0226 15 14 3.7647 -6.2894 0.0102 16 1 4.2608 -6.3511 1.4085 17 1 4.0949 -7.5573 -0.6887 18 1 4.4107 -5.1530 -0.6945 19 1 -0.3634 0.0045 1.0275 20 1 -0.3633 0.8876 -0.5179 21 1 -0.3632 -0.8923 -0.5099 22 1 1.6572 2.1316 -0.0004 23 1 4.1180 2.1351 -0.0086 24 1 4.1300 -2.1332 0.0002 25 1 2.9335 -3.5991 0.8978 26 1 2.9273 -3.6028 -0.8822 27 1 1.4839 -7.9857 0.0232 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230415788.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:05 Heat of formation + Delta-G solvation = -70.471970 kcal Electronic energy + Delta-G solvation = -13270.848548 eV Core-core repulsion = 10715.205057 eV Total energy + Delta-G solvation = -2555.643492 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.70889 -39.68020 -36.84364 -32.91928 -32.18487 -30.05142 -28.41860 -26.16398 -23.47113 -21.52320 -21.15102 -18.12269 -16.88248 -16.43424 -15.55511 -15.42905 -15.15147 -14.82780 -14.50370 -13.65939 -13.53231 -13.14490 -12.85945 -12.29552 -11.75807 -11.64257 -11.26230 -11.16964 -11.07194 -10.93948 -10.29790 -10.03112 -9.43533 -8.80068 -8.58079 -7.73545 -6.28808 -4.31388 1.34288 1.57894 3.14625 3.21562 3.22841 3.81224 3.98194 4.20412 4.46986 4.94384 5.01807 5.15288 5.18164 5.41417 5.71036 5.85330 5.96615 6.08052 6.21290 6.31335 6.42722 6.50541 6.64339 6.69436 7.02151 7.31183 7.87346 8.41736 8.79692 9.26805 10.83336 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.034915 B = 0.009344 C = 0.007411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.757809 B = 2995.915159 C = 3777.223246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.140 4.140 3 C -0.058 4.058 4 C -0.206 4.206 5 C 0.129 3.871 6 F -0.144 7.144 7 C -0.251 4.251 8 C 0.176 3.824 9 O -0.292 6.292 10 C 0.164 3.836 11 C -0.530 4.530 12 H 0.088 0.912 13 C 0.080 3.920 14 N -0.886 5.886 15 Si 0.871 3.129 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.265 1.265 19 H 0.066 0.934 20 H 0.060 0.940 21 H 0.076 0.924 22 H 0.133 0.867 23 H 0.129 0.871 24 H 0.140 0.860 25 H 0.016 0.984 26 H 0.021 0.979 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 14.251 -0.072 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.141 4.141 3 C -0.076 4.076 4 C -0.225 4.225 5 C 0.110 3.890 6 F -0.122 7.122 7 C -0.270 4.270 8 C 0.128 3.872 9 O -0.203 6.203 10 C 0.091 3.909 11 C -0.567 4.567 12 H 0.106 0.894 13 C -0.124 4.124 14 N -0.523 5.523 15 Si 0.697 3.303 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.190 1.190 19 H 0.085 0.915 20 H 0.079 0.921 21 H 0.094 0.906 22 H 0.151 0.849 23 H 0.147 0.853 24 H 0.158 0.842 25 H 0.034 0.966 26 H 0.038 0.962 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.640 13.958 -0.074 14.425 hybrid contribution 1.606 -0.433 0.023 1.663 sum 5.245 13.524 -0.050 14.506 Atomic orbital electron populations 1.20567 0.90178 1.02800 1.02278 1.19351 0.96985 0.90256 1.07511 1.20614 0.92790 0.97038 0.97171 1.20837 0.94863 0.96520 1.10308 1.17405 0.76386 0.94133 1.01063 1.91467 1.29431 1.97474 1.93863 1.21304 0.94521 0.98459 1.12746 1.18829 0.89293 0.87689 0.91424 1.86189 1.36452 1.12193 1.85484 1.21091 0.92938 0.80838 0.96029 1.20734 0.95559 0.87501 1.52952 0.89442 1.24684 0.98186 0.95315 0.94174 1.69847 1.35045 0.98462 1.48971 0.86919 0.85582 0.78629 0.79148 1.19539 1.20307 1.18963 0.91495 0.92088 0.90554 0.84898 0.85263 0.84217 0.96632 0.96158 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 9.79 36.01 0.35 -1.06 15 2 C -0.14 -2.24 5.89 -104.46 -0.62 -2.85 15 3 C -0.06 -0.77 9.69 -39.61 -0.38 -1.15 15 4 C -0.21 -2.85 10.02 -39.49 -0.40 -3.25 15 5 C 0.13 2.12 7.30 -39.44 -0.29 1.83 15 6 F -0.14 -2.34 17.27 2.25 0.04 -2.30 15 7 C -0.25 -4.63 9.01 -39.37 -0.35 -4.99 15 8 C 0.18 3.40 6.66 -39.23 -0.26 3.14 15 9 O -0.29 -6.62 9.16 -19.40 -0.18 -6.80 15 10 C 0.16 4.02 3.56 36.01 0.13 4.15 15 11 C -0.53 -15.09 9.99 -34.44 -0.34 -15.44 15 12 H 0.09 2.70 8.06 -52.49 -0.42 2.28 15 13 C 0.08 2.26 5.47 -17.82 -0.10 2.17 15 14 N -0.89 -26.39 13.96 55.43 0.77 -25.62 15 15 Si 0.87 20.63 27.47 -169.99 -4.67 15.96 15 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 18 H -0.26 -6.01 6.54 56.52 0.37 -5.64 15 19 H 0.07 0.88 8.14 -51.93 -0.42 0.45 15 20 H 0.06 0.67 8.09 -51.93 -0.42 0.25 15 21 H 0.08 1.20 7.53 -51.93 -0.39 0.81 15 22 H 0.13 1.30 8.06 -52.49 -0.42 0.88 15 23 H 0.13 1.44 8.06 -52.48 -0.42 1.01 15 24 H 0.14 2.65 6.30 -52.48 -0.33 2.32 15 25 H 0.02 0.38 7.09 -51.93 -0.37 0.01 15 26 H 0.02 0.49 6.72 -51.93 -0.35 0.15 15 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 LS Contribution 242.34 15.07 3.65 3.65 Total: -1.00 -29.48 242.34 -5.36 -34.84 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -2.72 Total: -2.28 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -2.26 Total: -17.45 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.77 Total: -25.62 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.18 Total: -6.80 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.48 -5.36 -34.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230415788.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.631 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds