Wall clock time and date at job start Mon Mar 30 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38180 * 119.99842 * 2 1 4 4 C 1.38211 * 120.07595 * 180.22849 * 3 2 1 5 5 C 1.38512 * 120.08589 * 359.79186 * 4 3 2 6 6 F 1.35108 * 119.99716 * 179.97438 * 5 4 3 7 7 C 1.38336 * 120.00773 * 359.95115 * 5 4 3 8 8 C 1.38712 * 119.92159 * 0.02562 * 7 5 4 9 9 O 1.35893 * 120.04818 * 179.97438 * 8 7 5 10 10 C 1.42906 * 116.99564 * 0.02562 * 9 8 7 11 11 C 1.50706 * 109.46699 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.71972 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99350 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47353 * 89.99430 * 15 13 11 17 17 H 1.48494 * 109.47031 * 209.99977 * 15 13 11 18 18 H 1.48504 * 109.46680 * 329.99678 * 15 13 11 19 19 H 1.08990 * 109.47474 * 270.25362 * 1 2 3 20 20 H 1.08997 * 109.46812 * 30.25922 * 1 2 3 21 21 H 1.09003 * 109.46391 * 150.25476 * 1 2 3 22 22 H 1.08001 * 119.96314 * 359.97438 * 3 2 1 23 23 H 1.08007 * 119.95430 * 179.76462 * 4 3 2 24 24 H 1.08003 * 120.04025 * 180.02562 * 7 5 4 25 25 H 1.09000 * 109.47490 * 59.99632 * 10 9 8 26 26 H 1.09001 * 109.47232 * 299.98986 * 10 9 8 27 27 H 0.97005 * 119.99656 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1967 0.0000 4 6 3.5800 1.1986 -0.0048 5 6 4.2760 0.0010 -0.0052 6 9 5.6270 0.0049 -0.0104 7 6 3.5879 -1.1991 0.0002 8 6 2.2008 -1.2013 0.0054 9 8 1.5222 -2.3787 0.0102 10 6 2.3016 -3.5766 0.0100 11 6 1.3845 -4.7724 0.0162 12 1 0.3138 -4.6318 0.0245 13 6 1.9126 -6.0461 0.0166 14 7 1.1123 -7.0897 0.0226 15 14 3.7647 -6.2894 0.0102 16 1 4.2608 -6.3511 1.4085 17 1 4.0949 -7.5573 -0.6887 18 1 4.4107 -5.1530 -0.6945 19 1 -0.3634 0.0045 1.0275 20 1 -0.3633 0.8876 -0.5179 21 1 -0.3632 -0.8923 -0.5099 22 1 1.6572 2.1316 -0.0004 23 1 4.1180 2.1351 -0.0086 24 1 4.1300 -2.1332 0.0002 25 1 2.9335 -3.5991 0.8978 26 1 2.9273 -3.6028 -0.8822 27 1 1.4839 -7.9857 0.0232 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230415788.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:05 Heat of formation + Delta-G solvation = -88.612971 kcal Electronic energy + Delta-G solvation = -13271.635201 eV Core-core repulsion = 10715.205057 eV Total energy + Delta-G solvation = -2556.430145 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.95662 -41.09316 -38.30994 -35.04246 -33.43364 -31.47731 -30.28725 -27.36485 -25.21385 -23.01492 -22.51565 -19.71111 -18.77321 -17.91503 -16.96218 -16.79943 -16.45955 -16.37979 -16.35310 -15.07890 -14.78620 -14.63754 -14.40427 -13.81434 -13.22959 -13.19580 -12.92255 -12.62421 -12.51034 -12.21743 -11.97787 -11.82428 -11.54566 -10.94768 -9.83567 -9.08647 -8.47585 -6.58069 0.10421 0.32027 1.27894 1.29179 1.39224 2.19611 2.43715 2.57164 2.84545 3.21100 3.75468 3.91311 4.03553 4.17373 4.34022 4.56604 4.69463 4.75365 4.87641 4.95738 5.03471 5.19316 5.26422 5.35984 5.49109 5.74895 5.96974 6.45953 6.63218 7.05634 8.68699 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.034915 B = 0.009344 C = 0.007411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.757809 B = 2995.915159 C = 3777.223246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.143 4.143 3 C -0.042 4.042 4 C -0.184 4.184 5 C 0.116 3.884 6 F -0.145 7.145 7 C -0.267 4.267 8 C 0.134 3.866 9 O -0.317 6.317 10 C 0.179 3.821 11 C -0.552 4.552 12 H 0.041 0.959 13 C 0.026 3.974 14 N -0.931 5.931 15 Si 0.944 3.056 16 H -0.257 1.257 17 H -0.267 1.267 18 H -0.250 1.250 19 H 0.073 0.927 20 H 0.098 0.902 21 H 0.046 0.954 22 H 0.182 0.818 23 H 0.168 0.832 24 H 0.125 0.875 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.450 17.036 -0.057 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.144 4.144 3 C -0.059 4.059 4 C -0.203 4.203 5 C 0.096 3.904 6 F -0.123 7.123 7 C -0.287 4.287 8 C 0.087 3.913 9 O -0.230 6.230 10 C 0.105 3.895 11 C -0.590 4.590 12 H 0.060 0.940 13 C -0.174 4.174 14 N -0.569 5.569 15 Si 0.765 3.235 16 H -0.181 1.181 17 H -0.191 1.191 18 H -0.174 1.174 19 H 0.092 0.908 20 H 0.117 0.883 21 H 0.065 0.935 22 H 0.200 0.800 23 H 0.185 0.815 24 H 0.143 0.857 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.268 16.771 -0.058 17.579 hybrid contribution 1.008 -1.144 0.020 1.524 sum 6.276 15.627 -0.039 16.840 Atomic orbital electron populations 1.20613 0.89081 1.03187 1.02870 1.19772 0.98072 0.90021 1.06511 1.21140 0.92704 0.97587 0.94510 1.21329 0.95235 0.96819 1.06924 1.17577 0.76476 0.94417 1.01887 1.91464 1.29457 1.97481 1.93944 1.21282 0.94387 0.99065 1.13942 1.19222 0.90011 0.87332 0.94703 1.86111 1.36948 1.12864 1.87096 1.20687 0.91925 0.80633 0.96227 1.20963 0.94239 0.90006 1.53778 0.94045 1.25660 1.04074 0.94561 0.93110 1.69983 1.37819 0.99276 1.49833 0.85775 0.78350 0.79304 0.80070 1.18130 1.19137 1.17369 0.90812 0.88305 0.93497 0.80036 0.81458 0.85710 0.95967 0.95853 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 9.79 71.24 0.70 -1.95 15 2 C -0.14 -4.27 5.89 -19.76 -0.12 -4.39 15 3 C -0.04 -0.91 9.69 22.25 0.22 -0.69 15 4 C -0.18 -4.25 10.02 22.33 0.22 -4.03 15 5 C 0.12 3.53 7.30 22.36 0.16 3.69 15 6 F -0.14 -4.40 17.27 44.97 0.78 -3.63 15 7 C -0.27 -9.77 9.01 22.41 0.20 -9.57 15 8 C 0.13 5.18 6.66 22.50 0.15 5.33 15 9 O -0.32 -15.02 9.16 -92.34 -0.85 -15.86 15 10 C 0.18 9.05 3.56 71.24 0.25 9.30 15 11 C -0.55 -33.06 9.99 25.60 0.26 -32.80 15 12 H 0.04 2.76 8.06 -2.91 -0.02 2.74 15 13 C 0.03 1.50 5.47 84.66 0.46 1.96 15 14 N -0.93 -57.26 13.96 21.45 0.30 -56.96 15 15 Si 0.94 42.76 27.47 68.60 1.88 44.65 15 16 H -0.26 -11.06 7.11 99.48 0.71 -10.35 15 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 18 H -0.25 -10.64 6.54 99.48 0.65 -9.99 15 19 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 20 H 0.10 1.80 8.09 -2.39 -0.02 1.78 15 21 H 0.05 1.50 7.53 -2.39 -0.02 1.48 15 22 H 0.18 2.25 8.06 -2.91 -0.02 2.23 15 23 H 0.17 2.65 8.06 -2.91 -0.02 2.63 15 24 H 0.12 4.80 6.30 -2.91 -0.02 4.79 15 25 H 0.02 1.09 7.09 -2.39 -0.02 1.07 15 26 H 0.02 1.16 6.72 -2.39 -0.02 1.14 15 27 H 0.28 15.58 8.31 -92.70 -0.77 14.81 15 Total: -1.00 -67.40 242.34 5.74 -61.66 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: 1.12 Total: 3.28 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 2.51 Total: -33.14 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.30 Total: -56.96 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.85 Total: -15.86 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.88 Total: 44.65 kcal Total: -67.40 5.74 -61.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230415788.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.955 kcal (2) G-P(sol) polarization free energy of solvation -67.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds