Wall clock time and date at job start Mon Mar 30 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34745 * 119.75551 * 2 1 4 4 N 1.30424 * 121.88758 * 179.72703 * 3 2 1 5 5 C 1.34529 * 121.25329 * 0.27303 * 4 3 2 6 6 O 1.22245 * 120.30833 * 180.02562 * 5 4 3 7 7 C 1.41381 * 119.37267 * 0.02562 * 5 4 3 8 8 N 1.39639 * 120.86282 * 179.97438 * 7 5 4 9 9 C 1.36724 * 119.99920 * 24.91655 * 8 7 5 10 10 H 1.07998 * 120.00090 * 10.36049 * 9 8 7 11 11 C 1.38664 * 120.00085 * 190.36188 * 9 8 7 12 12 N 1.31702 * 119.99868 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00096 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47417 * 60.00020 * 13 11 9 15 15 H 1.48498 * 109.47285 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47140 * 299.99622 * 13 11 9 17 17 C 1.36731 * 119.76098 * 180.28145 * 2 1 3 18 18 N 1.37599 * 120.63787 * 359.97438 * 17 2 1 19 19 H 1.08995 * 109.47533 * 89.99806 * 1 2 3 20 20 H 1.09010 * 109.46883 * 210.00090 * 1 2 3 21 21 H 1.09006 * 109.47052 * 329.99453 * 1 2 3 22 22 H 1.07996 * 119.05666 * 0.02562 * 3 2 1 23 23 H 0.96993 * 120.00306 * 204.91980 * 8 7 5 24 24 H 0.96998 * 120.00123 * 180.02562 * 12 11 9 25 25 H 0.97001 * 119.99838 * 180.27190 * 18 17 2 26 26 H 0.96997 * 120.00465 * 0.27636 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1338 1.1698 0.0000 4 7 3.4371 1.2183 0.0053 5 6 4.1774 0.0950 0.0055 6 8 5.3981 0.1606 0.0110 7 6 3.5302 -1.1620 -0.0006 8 7 4.2680 -2.3475 -0.0011 9 6 5.5390 -2.3619 0.5027 10 1 5.9126 -1.5091 1.0500 11 6 6.3483 -3.4715 0.3110 12 7 5.8925 -4.5116 -0.3560 13 14 8.0844 -3.4914 0.9999 14 1 8.0332 -3.3356 2.4758 15 1 8.7365 -4.7819 0.6614 16 1 8.8637 -2.3730 0.4107 17 6 2.1437 -1.1870 -0.0058 18 7 1.4641 -2.3833 -0.0112 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8901 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 1.5745 2.0937 0.0004 23 1 3.8790 -3.1608 -0.3589 24 1 6.4584 -5.2879 -0.4898 25 1 1.9549 -3.2200 -0.0113 26 1 0.4941 -2.3902 -0.0149 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238524282.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:58 Heat of formation + Delta-G solvation = 40.007747 kcal Electronic energy + Delta-G solvation = -13824.084559 eV Core-core repulsion = 11325.444540 eV Total energy + Delta-G solvation = -2498.640019 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.44461 -37.16619 -35.60845 -33.69601 -32.73684 -31.10227 -28.28130 -26.55261 -24.55698 -22.37666 -21.70380 -18.80180 -17.18898 -16.94870 -16.35658 -15.47998 -15.27958 -14.51246 -14.22086 -13.83431 -13.45293 -13.30344 -12.74100 -12.28129 -11.69048 -11.35687 -11.13633 -10.81645 -10.47072 -10.17420 -9.92107 -9.54468 -8.38537 -8.28989 -7.87707 -6.24246 -6.02315 -3.25690 2.08490 2.51749 2.98087 3.37783 3.40935 3.48452 4.30975 4.42394 4.78114 4.86795 4.93797 5.17936 5.30043 5.38761 5.47425 5.70607 6.31916 6.55590 6.92079 7.09199 7.73112 7.96582 8.18781 8.29808 8.92050 9.08273 9.44508 9.64958 9.82213 10.94648 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.047819 B = 0.010170 C = 0.008581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.399953 B = 2752.515515 C = 3262.081212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.477 5.477 3 C 0.342 3.658 4 N -0.603 5.603 5 C 0.505 3.495 6 O -0.520 6.520 7 C -0.006 4.006 8 N -0.550 5.550 9 C -0.244 4.244 10 H 0.110 0.890 11 C -0.001 4.001 12 N -0.913 5.913 13 Si 0.931 3.069 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.273 1.273 17 C 0.199 3.801 18 N -0.866 5.866 19 H 0.069 0.931 20 H 0.078 0.922 21 H 0.086 0.914 22 H 0.186 0.814 23 H 0.389 0.611 24 H 0.267 0.733 25 H 0.408 0.592 26 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.729 4.841 0.815 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.180 5.180 3 C 0.055 3.945 4 N -0.351 5.351 5 C 0.296 3.704 6 O -0.399 6.399 7 C -0.132 4.132 8 N -0.162 5.162 9 C -0.375 4.375 10 H 0.128 0.872 11 C -0.200 4.200 12 N -0.554 5.554 13 Si 0.759 3.241 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.014 4.014 18 N -0.420 5.420 19 H 0.088 0.912 20 H 0.096 0.904 21 H 0.105 0.895 22 H 0.203 0.797 23 H 0.224 0.776 24 H 0.077 0.923 25 H 0.240 0.760 26 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -13.079 5.285 0.857 14.132 hybrid contribution -0.174 -1.585 -0.039 1.595 sum -13.253 3.699 0.818 13.784 Atomic orbital electron populations 1.22035 0.78874 1.04205 1.02990 1.43829 1.07281 1.04971 1.61904 1.24136 0.90030 0.87456 0.92852 1.69112 1.03678 1.32713 1.29551 1.17451 0.89225 0.84120 0.79579 1.90826 1.13008 1.87952 1.48081 1.19293 0.87367 0.91725 1.14826 1.40156 1.13429 1.05055 1.57568 1.20027 0.88784 1.02127 1.26604 0.87232 1.25212 1.00043 0.95999 0.98735 1.69722 1.37617 1.05910 1.42198 0.85870 0.82194 0.77063 0.78928 1.20292 1.21317 1.19881 1.16438 0.87503 0.79542 1.17952 1.41242 1.07495 1.04508 1.88746 0.91205 0.90367 0.89526 0.79717 0.77599 0.92308 0.76032 0.78786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.18 59.85 0.61 1.09 15 2 N -0.48 -6.72 3.01 -124.79 -0.38 -7.10 15 3 C 0.34 5.19 11.45 -90.71 -1.04 4.15 15 4 N -0.60 -13.09 10.44 -16.11 -0.17 -13.26 15 5 C 0.50 13.29 7.62 -15.17 -0.12 13.18 15 6 O -0.52 -15.98 14.79 4.69 0.07 -15.91 15 7 C -0.01 -0.16 6.57 -82.95 -0.55 -0.70 15 8 N -0.55 -14.71 5.21 -9.11 -0.05 -14.76 15 9 C -0.24 -7.25 8.74 -15.21 -0.13 -7.38 15 10 H 0.11 3.44 5.90 -52.49 -0.31 3.13 15 11 C 0.00 -0.01 5.50 -17.45 -0.10 -0.11 15 12 N -0.91 -26.48 13.08 55.48 0.73 -25.75 15 13 Si 0.93 23.10 29.55 -169.99 -5.02 18.08 15 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 16 H -0.27 -6.93 7.11 56.52 0.40 -6.53 15 17 C 0.20 3.65 7.54 -152.69 -1.15 2.50 15 18 N -0.87 -12.80 8.85 31.54 0.28 -12.52 15 19 H 0.07 0.44 8.14 -51.93 -0.42 0.02 15 20 H 0.08 0.53 6.45 -51.92 -0.33 0.20 15 21 H 0.09 0.41 8.00 -51.93 -0.42 0.00 15 22 H 0.19 1.71 8.00 -52.49 -0.42 1.29 15 23 H 0.39 10.05 6.66 -40.82 -0.27 9.77 15 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 25 H 0.41 6.55 7.31 -40.82 -0.30 6.25 15 26 H 0.38 4.11 6.76 -40.82 -0.28 3.83 15 LS Contribution 229.40 15.07 3.46 3.46 Total: -1.00 -37.36 229.40 -5.44 -42.80 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -1.88 Total: 12.22 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: -2.47 Total: 12.73 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: 0.41 Total: -73.38 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.07 Total: -15.91 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -37.36 -5.44 -42.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238524282.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.810 kcal (2) G-P(sol) polarization free energy of solvation -37.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds