Wall clock time and date at job start Mon Mar 30 2020 02:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36303 * 126.46059 * 2 1 4 4 C 1.36242 * 106.98105 * 180.02562 * 3 2 1 5 5 N 1.40198 * 125.86578 * 179.97438 * 4 3 2 6 6 N 1.33309 * 108.26507 * 0.02562 * 4 3 2 7 7 C 1.31886 * 109.24256 * 359.72160 * 6 4 3 8 8 C 1.47073 * 125.78684 * 180.29758 * 7 6 4 9 9 O 1.21689 * 120.00308 * 180.16480 * 8 7 6 10 10 N 1.34780 * 120.00005 * 0.17170 * 8 7 6 11 11 C 1.36748 * 120.00014 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99957 * 359.97438 * 11 10 8 13 13 C 1.39088 * 120.00011 * 180.02562 * 11 10 8 14 14 N 1.31343 * 119.99935 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00146 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47273 * 59.99815 * 15 13 11 17 17 H 1.48499 * 109.47175 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46950 * 299.99786 * 15 13 11 19 19 H 1.09002 * 109.47391 * 90.01972 * 1 2 3 20 20 H 1.09001 * 109.46813 * 330.02028 * 1 2 3 21 21 H 1.09004 * 109.47041 * 210.02155 * 1 2 3 22 22 H 1.08002 * 126.50665 * 359.97438 * 3 2 1 23 23 H 0.97004 * 119.99586 * 0.02562 * 5 4 3 24 24 H 0.96995 * 120.00303 * 179.97438 * 5 4 3 25 25 H 0.96998 * 119.99734 * 359.97438 * 10 8 7 26 26 H 0.96999 * 120.00080 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2750 1.0962 0.0000 4 6 3.5594 0.6419 -0.0006 5 7 4.7127 1.4391 -0.0013 6 7 3.5312 -0.6909 -0.0015 7 6 2.2771 -1.0991 0.0045 8 6 1.8285 -2.4997 0.0119 9 8 0.6393 -2.7578 0.0141 10 7 2.7346 -3.4975 0.0164 11 6 2.3175 -4.7998 0.0238 12 1 1.2621 -5.0288 0.0264 13 6 3.2526 -5.8294 0.0290 14 7 4.5361 -5.5509 0.0263 15 14 2.6829 -7.6084 0.0383 16 1 1.8650 -7.8727 -1.1727 17 1 3.8653 -8.5068 0.0421 18 1 1.8656 -7.8600 1.2523 19 1 -0.3634 -0.0004 -1.0277 20 1 -0.3633 0.8902 0.5135 21 1 -0.3633 -0.8898 0.5142 22 1 1.9586 2.1289 -0.0004 23 1 4.6339 2.4059 -0.0010 24 1 5.5893 1.0240 -0.0013 25 1 3.6825 -3.2917 0.0144 26 1 5.1883 -6.2690 0.0295 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238546417.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:51 Heat of formation + Delta-G solvation = 3.837685 kcal Electronic energy + Delta-G solvation = -13442.074192 eV Core-core repulsion = 10941.865722 eV Total energy + Delta-G solvation = -2500.208471 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.92214 -39.77950 -36.32930 -35.61088 -33.93433 -33.07188 -29.80734 -27.92288 -26.81104 -23.76394 -21.82850 -20.95019 -19.99307 -18.33429 -17.58229 -16.92493 -16.86509 -16.33856 -15.96116 -15.69859 -15.09491 -14.59413 -14.34291 -13.99087 -13.57664 -13.45002 -12.93233 -12.48528 -12.10448 -11.60652 -11.52686 -11.09758 -10.63852 -10.33380 -10.13882 -8.54048 -8.28454 -6.00858 0.52543 1.42637 1.47034 1.55576 1.79439 1.96178 2.29862 2.56009 2.78694 3.25475 3.31435 3.84108 4.18347 4.21581 4.44264 4.50356 4.78464 5.30446 5.36984 5.40555 5.87046 6.06339 6.42021 6.71507 6.77332 6.98494 7.38507 7.54349 7.93040 8.62947 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.045826 B = 0.008457 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.853807 B = 3309.939679 C = 3905.645372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.413 5.413 3 C -0.103 4.103 4 C 0.254 3.746 5 N -0.846 5.846 6 N -0.525 5.525 7 C 0.157 3.843 8 C 0.503 3.497 9 O -0.624 6.624 10 N -0.530 5.530 11 C -0.340 4.340 12 H 0.094 0.906 13 C -0.010 4.010 14 N -0.909 5.909 15 Si 1.008 2.992 16 H -0.266 1.266 17 H -0.269 1.269 18 H -0.266 1.266 19 H 0.084 0.916 20 H 0.123 0.877 21 H 0.080 0.920 22 H 0.222 0.778 23 H 0.419 0.581 24 H 0.402 0.598 25 H 0.401 0.599 26 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 12.428 0.061 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.096 5.096 3 C -0.242 4.242 4 C 0.023 3.977 5 N -0.399 5.399 6 N -0.256 5.256 7 C -0.102 4.102 8 C 0.289 3.711 9 O -0.513 6.513 10 N -0.163 5.163 11 C -0.470 4.470 12 H 0.112 0.888 13 C -0.212 4.212 14 N -0.548 5.548 15 Si 0.829 3.171 16 H -0.191 1.191 17 H -0.193 1.193 18 H -0.190 1.190 19 H 0.102 0.898 20 H 0.141 0.859 21 H 0.099 0.901 22 H 0.238 0.762 23 H 0.251 0.749 24 H 0.230 0.770 25 H 0.236 0.764 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.499 11.535 0.055 11.803 hybrid contribution 0.151 -0.013 -0.028 0.154 sum -2.349 11.521 0.027 11.758 Atomic orbital electron populations 1.22375 0.73943 1.05886 1.04729 1.45070 1.08909 1.04801 1.50824 1.22566 0.88625 0.93529 1.19500 1.18069 0.88841 0.87609 1.03152 1.41116 1.03025 1.07056 1.88665 1.69899 1.19182 1.12290 1.24222 1.22235 0.85327 0.90363 1.12269 1.16467 0.85794 0.82579 0.86232 1.90552 1.16493 1.84041 1.60246 1.41638 1.09042 1.05135 1.60482 1.19868 0.94907 0.81614 1.50617 0.88769 1.26381 0.94634 1.05091 0.95115 1.69710 1.01485 1.36160 1.47424 0.84787 0.77962 0.74906 0.79419 1.19064 1.19315 1.19036 0.89764 0.85881 0.90105 0.76164 0.74930 0.77001 0.76425 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.00 10.64 127.77 1.36 3.36 15 2 N -0.41 -14.70 3.18 -538.51 -1.71 -16.41 15 3 C -0.10 -2.98 11.61 83.53 0.97 -2.01 15 4 C 0.25 8.65 8.28 131.70 1.09 9.74 15 5 N -0.85 -20.41 9.16 -55.92 -0.51 -20.93 15 6 N -0.52 -23.21 10.89 -186.52 -2.03 -25.24 15 7 C 0.16 7.24 7.77 136.10 1.06 8.30 15 8 C 0.50 27.22 7.75 86.56 0.67 27.89 15 9 O -0.62 -35.24 14.23 -4.31 -0.06 -35.30 15 10 N -0.53 -30.42 5.27 -310.31 -1.64 -32.06 15 11 C -0.34 -19.98 9.67 84.13 0.81 -19.16 15 12 H 0.09 5.65 7.15 -2.91 -0.02 5.62 15 13 C -0.01 -0.56 5.50 84.97 0.47 -0.10 15 14 N -0.91 -51.12 13.05 21.69 0.28 -50.84 15 15 Si 1.01 42.72 29.55 68.60 2.03 44.74 15 16 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 17 H -0.27 -10.70 7.11 99.48 0.71 -10.00 15 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 19 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 20 H 0.12 2.21 8.14 -2.39 -0.02 2.19 15 21 H 0.08 2.79 6.32 -2.38 -0.02 2.77 15 22 H 0.22 3.86 8.06 -2.91 -0.02 3.84 15 23 H 0.42 6.64 8.96 -92.71 -0.83 5.81 15 24 H 0.40 9.59 8.96 -92.71 -0.83 8.76 15 25 H 0.40 23.28 7.56 -92.71 -0.70 22.58 15 26 H 0.28 14.70 8.31 -92.71 -0.77 13.93 15 Total: -1.00 -72.57 239.50 1.68 -70.89 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: -1.11 Total: 37.12 kcal Atomic # 6 Polarization: 21.59 SS G_CDS: 6.43 Total: 28.02 kcal Atomic # 7 Polarization: -139.86 SS G_CDS: -5.61 Total: -145.47 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.06 Total: -35.30 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -72.57 1.68 -70.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238546417.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.727 kcal (2) G-P(sol) polarization free energy of solvation -72.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds