Wall clock time and date at job start Mon Mar 30 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99767 * 2 1 4 4 H 1.48496 * 109.47015 * 269.99429 * 3 2 1 5 5 H 1.48496 * 109.47224 * 30.00180 * 3 2 1 6 6 H 1.48501 * 109.46938 * 149.99747 * 3 2 1 7 7 C 1.37881 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00038 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99596 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.47383 * 300.00539 * 9 7 2 11 11 N 1.46906 * 109.46894 * 60.00293 * 9 7 2 12 12 C 1.50698 * 109.47016 * 180.02562 * 9 7 2 13 13 C 1.38333 * 119.97365 * 264.97874 * 12 9 7 14 14 C 1.38232 * 120.15847 * 179.74210 * 13 12 9 15 15 C 1.38192 * 120.11334 * 0.56324 * 14 13 12 16 16 C 1.38795 * 119.94620 * 359.43682 * 15 14 13 17 17 N 1.39838 * 120.07891 * 180.25954 * 16 15 14 18 18 C 1.38234 * 119.97854 * 85.00038 * 12 9 7 19 19 F 1.35107 * 120.05119 * 0.02562 * 18 12 9 20 20 H 0.97002 * 120.00190 * 0.02562 * 1 2 3 21 21 H 1.00901 * 111.00081 * 60.00201 * 11 9 7 22 22 H 1.00909 * 110.99620 * 183.95100 * 11 9 7 23 23 H 1.08003 * 119.92523 * 0.02562 * 13 12 9 24 24 H 1.08003 * 119.94651 * 180.30084 * 14 13 12 25 25 H 1.08002 * 120.03021 * 179.72153 * 15 14 13 26 26 H 0.97003 * 120.00410 * 0.02562 * 17 16 15 27 27 H 0.97005 * 120.00207 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8753 -0.6803 -0.8888 11 7 4.0007 -0.5013 1.2007 12 6 4.0139 -2.6149 0.0010 13 6 4.3427 -3.2317 1.1947 14 6 4.7988 -4.5366 1.1995 15 6 4.9392 -5.2264 0.0103 16 6 4.6106 -4.6119 -1.1900 17 7 4.7464 -5.3092 -2.3946 18 6 4.1462 -3.3006 -1.1920 19 9 3.8260 -2.6978 -2.3579 20 1 -0.4850 0.8400 -0.0004 21 1 3.6769 -0.9587 2.0397 22 1 5.0073 -0.4313 1.1925 23 1 4.2385 -2.6941 2.1256 24 1 5.0499 -5.0166 2.1339 25 1 5.2999 -6.2444 0.0153 26 1 5.0702 -6.2235 -2.3919 27 1 4.5161 -4.8787 -3.2328 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238595562.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:51 Heat of formation + Delta-G solvation = -12.623127 kcal Electronic energy + Delta-G solvation = -13706.542394 eV Core-core repulsion = 11185.700167 eV Total energy + Delta-G solvation = -2520.842227 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.04846 -38.80508 -35.57979 -33.42849 -31.71830 -29.60298 -27.95542 -26.30795 -23.04875 -21.73625 -19.95854 -17.25254 -16.97041 -16.55806 -16.04444 -14.89354 -14.77186 -14.54909 -14.20059 -13.92819 -13.38265 -12.43827 -12.34652 -12.27317 -11.99594 -11.16906 -10.94275 -10.77112 -10.52845 -9.95817 -9.87725 -9.25218 -8.49142 -7.96269 -7.25584 -7.17018 -5.95703 -4.05582 1.77091 1.92910 3.55986 3.65037 3.96100 4.01366 4.19699 4.75371 4.85438 5.24776 5.34407 5.49394 5.68733 5.80889 5.96479 6.15601 6.44233 6.56599 6.78516 6.84414 7.12795 7.22666 7.64627 7.72433 7.88981 8.18503 8.35751 8.72122 9.03823 9.67939 11.14092 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.042076 B = 0.010685 C = 0.009744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.306434 B = 2619.774656 C = 2872.902253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.085 3.915 3 Si 0.866 3.134 4 H -0.297 1.297 5 H -0.304 1.304 6 H -0.192 1.192 7 C -0.516 4.516 8 H 0.069 0.931 9 C 0.219 3.781 10 H 0.050 0.950 11 N -0.833 5.833 12 C -0.054 4.054 13 C -0.158 4.158 14 C -0.084 4.084 15 C -0.198 4.198 16 C 0.181 3.819 17 N -0.880 5.880 18 C 0.024 3.976 19 F -0.139 7.139 20 H 0.263 0.737 21 H 0.331 0.669 22 H 0.309 0.691 23 H 0.123 0.877 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.396 0.604 27 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.580 -8.705 -0.176 14.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.119 4.119 3 Si 0.693 3.307 4 H -0.224 1.224 5 H -0.231 1.231 6 H -0.113 1.113 7 C -0.554 4.554 8 H 0.087 0.913 9 C 0.109 3.891 10 H 0.067 0.933 11 N -0.362 5.362 12 C -0.058 4.058 13 C -0.178 4.178 14 C -0.103 4.103 15 C -0.221 4.221 16 C 0.077 3.923 17 N -0.421 5.421 18 C 0.000 4.000 19 F -0.118 7.118 20 H 0.072 0.928 21 H 0.146 0.854 22 H 0.120 0.880 23 H 0.141 0.859 24 H 0.137 0.863 25 H 0.137 0.863 26 H 0.224 0.776 27 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 10.994 -7.912 -0.419 13.552 hybrid contribution 0.507 -0.323 -0.437 0.743 sum 11.501 -8.236 -0.856 14.171 Atomic orbital electron populations 1.69958 1.06941 1.27311 1.49482 1.24968 0.94521 1.00033 0.92328 0.87199 0.84609 0.80993 0.77864 1.22431 1.23119 1.11335 1.20625 0.86852 0.94582 1.53314 0.91321 1.18531 0.96612 0.83302 0.90610 0.93253 1.60054 1.12778 1.57625 1.05747 1.21182 0.93351 1.00300 0.90943 1.20647 1.04469 0.95337 0.97381 1.20800 0.98143 0.94339 0.96973 1.20255 1.10662 1.00433 0.90725 1.17776 0.96622 0.90235 0.87661 1.42258 1.77190 1.16860 1.05757 1.17010 1.09684 0.90860 0.82476 1.91417 1.91271 1.83272 1.45871 0.92799 0.85409 0.87961 0.85895 0.86301 0.86301 0.77609 0.77266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.40 13.96 55.43 0.77 -27.62 15 2 C 0.09 2.53 5.47 -17.82 -0.10 2.44 15 3 Si 0.87 22.07 26.94 -169.99 -4.58 17.49 15 4 H -0.30 -7.73 7.11 56.52 0.40 -7.32 15 5 H -0.30 -7.90 7.11 56.52 0.40 -7.50 15 6 H -0.19 -4.48 5.17 56.52 0.29 -4.18 15 7 C -0.52 -14.82 9.29 -34.44 -0.32 -15.14 15 8 H 0.07 2.19 7.98 -52.49 -0.42 1.77 15 9 C 0.22 5.17 2.12 -70.01 -0.15 5.03 15 10 H 0.05 1.24 7.21 -51.93 -0.37 0.86 15 11 N -0.83 -17.16 5.43 -6.65 -0.04 -17.20 15 12 C -0.05 -1.13 4.99 -104.59 -0.52 -1.65 15 13 C -0.16 -2.80 9.27 -39.55 -0.37 -3.17 15 14 C -0.08 -1.26 10.04 -39.60 -0.40 -1.66 15 15 C -0.20 -2.93 9.90 -39.39 -0.39 -3.32 15 16 C 0.18 3.01 6.76 -83.68 -0.57 2.45 15 17 N -0.88 -11.39 9.09 32.46 0.30 -11.10 15 18 C 0.02 0.48 7.25 -39.26 -0.28 0.20 15 19 F -0.14 -3.02 15.94 2.25 0.04 -2.99 15 20 H 0.26 7.82 8.31 -40.82 -0.34 7.48 15 21 H 0.33 6.49 7.20 -39.29 -0.28 6.21 15 22 H 0.31 5.47 9.06 -39.29 -0.36 5.11 15 23 H 0.12 2.01 6.28 -52.48 -0.33 1.68 15 24 H 0.12 1.42 8.06 -52.48 -0.42 1.00 15 25 H 0.12 1.39 8.06 -52.49 -0.42 0.97 15 26 H 0.40 3.85 8.84 -40.82 -0.36 3.49 15 27 H 0.40 5.02 8.32 -40.82 -0.34 4.68 15 LS Contribution 235.15 15.07 3.54 3.54 Total: -1.00 -32.84 235.15 -5.61 -38.45 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -2.55 Total: 14.25 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -3.09 Total: -14.83 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 1.03 Total: -55.92 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.58 Total: 17.49 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -32.84 -5.61 -38.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595562.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.824 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds