Wall clock time and date at job start Mon Mar 30 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99767 * 2 1 4 4 H 1.48496 * 109.47015 * 269.99429 * 3 2 1 5 5 H 1.48496 * 109.47224 * 30.00180 * 3 2 1 6 6 H 1.48501 * 109.46938 * 149.99747 * 3 2 1 7 7 C 1.37881 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00038 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99596 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.47383 * 300.00539 * 9 7 2 11 11 N 1.46906 * 109.46894 * 60.00293 * 9 7 2 12 12 C 1.50698 * 109.47016 * 180.02562 * 9 7 2 13 13 C 1.38333 * 119.97365 * 264.97874 * 12 9 7 14 14 C 1.38232 * 120.15847 * 179.74210 * 13 12 9 15 15 C 1.38192 * 120.11334 * 0.56324 * 14 13 12 16 16 C 1.38795 * 119.94620 * 359.43682 * 15 14 13 17 17 N 1.39838 * 120.07891 * 180.25954 * 16 15 14 18 18 C 1.38234 * 119.97854 * 85.00038 * 12 9 7 19 19 F 1.35107 * 120.05119 * 0.02562 * 18 12 9 20 20 H 0.97002 * 120.00190 * 0.02562 * 1 2 3 21 21 H 1.00901 * 111.00081 * 60.00201 * 11 9 7 22 22 H 1.00909 * 110.99620 * 183.95100 * 11 9 7 23 23 H 1.08003 * 119.92523 * 0.02562 * 13 12 9 24 24 H 1.08003 * 119.94651 * 180.30084 * 14 13 12 25 25 H 1.08002 * 120.03021 * 179.72153 * 15 14 13 26 26 H 0.97003 * 120.00410 * 0.02562 * 17 16 15 27 27 H 0.97005 * 120.00207 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8753 -0.6803 -0.8888 11 7 4.0007 -0.5013 1.2007 12 6 4.0139 -2.6149 0.0010 13 6 4.3427 -3.2317 1.1947 14 6 4.7988 -4.5366 1.1995 15 6 4.9392 -5.2264 0.0103 16 6 4.6106 -4.6119 -1.1900 17 7 4.7464 -5.3092 -2.3946 18 6 4.1462 -3.3006 -1.1920 19 9 3.8260 -2.6978 -2.3579 20 1 -0.4850 0.8400 -0.0004 21 1 3.6769 -0.9587 2.0397 22 1 5.0073 -0.4313 1.1925 23 1 4.2385 -2.6941 2.1256 24 1 5.0499 -5.0166 2.1339 25 1 5.2999 -6.2444 0.0153 26 1 5.0702 -6.2235 -2.3919 27 1 4.5161 -4.8787 -3.2328 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238595562.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:51 Heat of formation + Delta-G solvation = -38.400285 kcal Electronic energy + Delta-G solvation = -13707.660176 eV Core-core repulsion = 11185.700167 eV Total energy + Delta-G solvation = -2521.960008 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.60430 -40.15493 -37.15724 -34.91677 -33.77535 -31.02974 -29.22719 -28.31473 -24.74429 -23.05902 -21.59683 -19.02498 -18.58236 -18.01146 -17.41338 -16.60929 -16.30842 -16.17930 -15.76248 -15.47989 -15.00665 -14.30744 -13.90217 -13.65450 -13.61348 -12.93760 -12.69701 -12.48996 -12.12039 -11.66952 -11.58561 -11.25740 -10.74722 -9.43464 -8.95223 -8.42323 -8.24821 -6.38046 0.41744 0.60938 1.51253 1.56438 1.93288 2.60914 2.84029 2.92944 3.13700 3.53014 3.98198 4.15544 4.19885 4.45549 4.54945 4.79268 5.05631 5.14750 5.31042 5.46269 5.56159 5.75362 5.97180 6.13268 6.48332 6.49859 6.75873 6.93858 7.04741 7.39186 8.88808 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.042076 B = 0.010685 C = 0.009744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.306434 B = 2619.774656 C = 2872.902253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.305 1.305 5 H -0.310 1.310 6 H -0.152 1.152 7 C -0.513 4.513 8 H 0.019 0.981 9 C 0.230 3.770 10 H 0.032 0.968 11 N -0.831 5.831 12 C -0.086 4.086 13 C -0.170 4.170 14 C -0.071 4.071 15 C -0.188 4.188 16 C 0.183 3.817 17 N -0.866 5.866 18 C -0.021 4.021 19 F -0.160 7.160 20 H 0.263 0.737 21 H 0.340 0.660 22 H 0.333 0.667 23 H 0.133 0.867 24 H 0.161 0.839 25 H 0.161 0.839 26 H 0.414 0.586 27 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.231 -10.051 0.927 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.174 4.174 3 Si 0.755 3.245 4 H -0.233 1.233 5 H -0.238 1.238 6 H -0.073 1.073 7 C -0.551 4.551 8 H 0.038 0.962 9 C 0.119 3.881 10 H 0.050 0.950 11 N -0.363 5.363 12 C -0.089 4.089 13 C -0.190 4.190 14 C -0.089 4.089 15 C -0.211 4.211 16 C 0.077 3.923 17 N -0.408 5.408 18 C -0.045 4.045 19 F -0.139 7.139 20 H 0.071 0.929 21 H 0.155 0.845 22 H 0.146 0.854 23 H 0.151 0.849 24 H 0.178 0.822 25 H 0.178 0.822 26 H 0.246 0.754 27 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 13.683 -9.308 0.676 16.562 hybrid contribution -0.301 -0.118 -0.798 0.861 sum 13.382 -9.426 -0.122 16.368 Atomic orbital electron populations 1.70105 1.08876 1.28135 1.52034 1.25933 0.95206 1.04000 0.92214 0.86303 0.84786 0.75901 0.77524 1.23350 1.23796 1.07252 1.20851 0.89955 0.92407 1.51929 0.96228 1.18055 0.93150 0.85888 0.90989 0.95014 1.59659 1.14583 1.57162 1.04887 1.21009 0.95938 0.99239 0.92724 1.20843 1.04895 0.96812 0.96441 1.21269 0.95709 0.93016 0.98914 1.20782 1.08726 1.01974 0.89610 1.17940 0.95623 0.89068 0.89626 1.42249 1.76195 1.17525 1.04811 1.17440 1.12404 0.92797 0.81856 1.91348 1.91805 1.83904 1.46847 0.92858 0.84480 0.85364 0.84888 0.82170 0.82178 0.75441 0.77112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.48 13.96 21.45 0.30 -62.18 15 2 C 0.02 1.51 5.47 84.65 0.46 1.97 15 3 Si 0.93 46.29 26.94 68.60 1.85 48.14 15 4 H -0.31 -15.54 7.11 99.48 0.71 -14.83 15 5 H -0.31 -15.64 7.11 99.48 0.71 -14.93 15 6 H -0.15 -6.59 5.17 99.48 0.51 -6.08 15 7 C -0.51 -30.54 9.29 25.60 0.24 -30.30 15 8 H 0.02 1.31 7.98 -2.91 -0.02 1.29 15 9 C 0.23 10.90 2.12 43.42 0.09 11.00 15 10 H 0.03 1.61 7.21 -2.38 -0.02 1.60 15 11 N -0.83 -32.79 5.43 -174.94 -0.95 -33.74 15 12 C -0.09 -3.55 4.99 -19.84 -0.10 -3.65 15 13 C -0.17 -5.65 9.27 22.29 0.21 -5.45 15 14 C -0.07 -1.83 10.04 22.26 0.22 -1.61 15 15 C -0.19 -4.76 9.90 22.39 0.22 -4.54 15 16 C 0.18 5.71 6.76 38.21 0.26 5.97 15 17 N -0.87 -20.37 9.09 -51.21 -0.47 -20.84 15 18 C -0.02 -0.85 7.25 22.48 0.16 -0.68 15 19 F -0.16 -7.16 15.94 44.97 0.72 -6.44 15 20 H 0.26 16.27 8.31 -92.71 -0.77 15.50 15 21 H 0.34 12.70 7.20 -89.69 -0.65 12.05 15 22 H 0.33 10.85 9.06 -89.69 -0.81 10.04 15 23 H 0.13 4.03 6.28 -2.91 -0.02 4.01 15 24 H 0.16 2.86 8.06 -2.91 -0.02 2.84 15 25 H 0.16 2.74 8.06 -2.91 -0.02 2.72 15 26 H 0.41 6.61 8.84 -92.71 -0.82 5.79 15 27 H 0.40 9.53 8.32 -92.70 -0.77 8.76 15 Total: -1.00 -74.83 235.15 1.22 -73.61 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -2.00 Total: 28.75 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 1.77 Total: -27.31 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -1.12 Total: -116.76 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.72 Total: -6.44 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.85 Total: 48.14 kcal Total: -74.83 1.22 -73.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595562.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.210 kcal (2) G-P(sol) polarization free energy of solvation -74.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds