Wall clock time and date at job start Mon Mar 30 2020 02:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99931 * 2 1 4 4 H 1.48501 * 109.47413 * 270.00248 * 3 2 1 5 5 H 1.48507 * 109.47149 * 30.00414 * 3 2 1 6 6 H 1.48500 * 109.46918 * 150.00250 * 3 2 1 7 7 C 1.37881 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00048 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99846 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47139 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.81065 * 300.52733 * 10 9 7 12 12 O 1.20829 * 119.99378 * 239.47282 * 11 10 9 13 13 O 1.34227 * 120.00239 * 59.47218 * 11 10 9 14 14 C 1.53022 * 109.64415 * 61.05260 * 10 9 7 15 15 C 1.50074 * 110.14426 * 70.24576 * 14 10 9 16 16 C 1.29445 * 124.07514 * 17.13768 * 15 14 10 17 17 C 1.50066 * 124.07462 * 359.52270 * 16 15 14 18 18 C 1.53020 * 110.14929 * 17.13805 * 17 16 15 19 19 H 0.96997 * 119.99616 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47239 * 59.99384 * 9 7 2 21 21 H 1.09001 * 109.47149 * 299.99743 * 9 7 2 22 22 H 0.96702 * 116.99802 * 179.97438 * 13 11 10 23 23 H 1.08995 * 109.36175 * 190.45439 * 14 10 9 24 24 H 1.09007 * 109.35760 * 310.18393 * 14 10 9 25 25 H 1.08001 * 117.96056 * 197.15499 * 15 14 10 26 26 H 1.08002 * 117.96033 * 179.81016 * 16 15 14 27 27 H 1.08999 * 109.35552 * 137.34338 * 17 16 15 28 28 H 1.08995 * 109.35735 * 256.92543 * 17 16 15 29 29 H 1.08995 * 109.64347 * 70.24041 * 18 17 16 30 30 H 1.08991 * 109.64580 * 190.66630 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 3.5123 -3.3585 1.2209 12 8 4.2931 -3.8301 2.0133 13 8 2.1915 -3.4775 1.4280 14 6 3.5359 -3.3538 -1.2615 15 6 4.2436 -2.8121 -2.4690 16 6 5.3363 -2.1199 -2.4194 17 6 6.0425 -1.7536 -1.1469 18 6 5.5555 -2.6412 0.0005 19 1 -0.4849 0.8401 0.0004 20 1 3.8746 -0.6808 0.8905 21 1 3.8753 -0.6797 -0.8895 22 1 1.9129 -3.9492 2.2249 23 1 3.7397 -4.4208 -1.1717 24 1 2.4628 -3.1992 -1.3746 25 1 3.8143 -3.0120 -3.4396 26 1 5.7638 -1.7811 -3.3515 27 1 7.1161 -1.8890 -1.2778 28 1 5.8385 -0.7099 -0.9081 29 1 5.9188 -3.6586 -0.1437 30 1 5.9258 -2.2508 0.9483 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238649140.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:44 Heat of formation + Delta-G solvation = -108.870461 kcal Electronic energy + Delta-G solvation = -14543.989663 eV Core-core repulsion = 12110.141393 eV Total energy + Delta-G solvation = -2433.848270 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.72019 -39.28021 -36.96079 -34.94928 -33.12264 -31.68308 -29.63293 -25.55368 -24.18887 -23.94538 -21.08777 -19.22598 -18.64451 -18.10476 -17.54970 -16.47587 -16.17737 -15.77574 -15.13259 -14.86766 -14.44422 -14.14967 -13.89742 -13.59614 -13.09232 -13.05131 -12.85471 -12.38543 -12.27169 -11.90359 -11.79072 -11.42615 -11.27092 -10.99109 -10.90237 -10.63352 -9.73955 -8.14904 -6.14352 1.33403 1.37208 1.40490 1.48300 1.55431 2.35924 2.46081 3.18725 3.72864 3.85722 4.09001 4.33889 4.47264 4.48838 4.57414 4.68395 4.83568 4.95028 5.03437 5.13498 5.25436 5.29289 5.37292 5.39698 5.71546 5.74454 5.88822 6.18227 6.44726 6.98776 7.22533 7.46435 9.00270 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.026373 B = 0.014897 C = 0.011926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.428207 B = 1879.080146 C = 2347.210879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.924 3.076 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.253 1.253 7 C -0.503 4.503 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.043 4.043 11 C 0.501 3.499 12 O -0.561 6.561 13 O -0.490 6.490 14 C -0.071 4.071 15 C -0.152 4.152 16 C -0.162 4.162 17 C -0.089 4.089 18 C -0.097 4.097 19 H 0.260 0.740 20 H 0.008 0.992 21 H 0.045 0.955 22 H 0.407 0.593 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.578 -4.352 -3.249 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.187 4.187 3 Si 0.749 3.251 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.177 1.177 7 C -0.541 4.541 8 H 0.092 0.908 9 C -0.035 4.035 10 C -0.044 4.044 11 C 0.346 3.654 12 O -0.454 6.454 13 O -0.300 6.300 14 C -0.108 4.108 15 C -0.170 4.170 16 C -0.180 4.180 17 C -0.126 4.126 18 C -0.134 4.134 19 H 0.069 0.931 20 H 0.026 0.974 21 H 0.063 0.937 22 H 0.266 0.734 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.135 0.865 26 H 0.143 0.857 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.754 -4.153 -3.404 12.020 hybrid contribution -0.562 0.569 0.799 1.130 sum 10.192 -3.584 -2.605 11.114 Atomic orbital electron populations 1.70043 1.07833 1.27294 1.53882 1.25736 0.95324 1.02256 0.95339 0.86057 0.79686 0.80309 0.79066 1.19131 1.21848 1.17690 1.21594 0.90642 0.94287 1.47608 0.90780 1.19615 0.95686 0.90922 0.97260 1.20624 0.96466 0.96706 0.90591 1.23681 0.79997 0.74834 0.86870 1.90584 1.58106 1.48564 1.48119 1.84942 1.25268 1.71408 1.48395 1.20378 1.01014 0.98213 0.91148 1.22011 0.96343 1.00371 0.98253 1.22190 0.97093 0.99534 0.99137 1.20531 1.00745 0.99317 0.91963 1.21539 0.91144 1.01272 0.99463 0.93083 0.97400 0.93656 0.73413 0.90751 0.90774 0.86486 0.85682 0.88230 0.91156 0.90840 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.00 13.96 21.45 0.30 -57.70 16 2 C 0.01 0.54 5.47 84.65 0.46 1.00 16 3 Si 0.92 43.38 27.47 68.60 1.88 45.26 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 7 C -0.50 -27.04 7.76 25.60 0.20 -26.84 16 8 H 0.07 4.28 5.21 -2.91 -0.02 4.27 16 9 C 0.00 0.11 2.44 29.85 0.07 0.18 16 10 C -0.04 -1.64 0.51 -52.79 -0.03 -1.67 16 11 C 0.50 20.30 6.87 71.24 0.49 20.79 16 12 O -0.56 -23.58 16.66 21.95 0.37 -23.22 16 13 O -0.49 -19.49 10.54 -51.39 -0.54 -20.03 16 14 C -0.07 -2.49 4.73 29.66 0.14 -2.35 16 15 C -0.15 -4.61 9.40 27.04 0.25 -4.35 16 16 C -0.16 -4.39 9.15 27.03 0.25 -4.15 16 17 C -0.09 -2.41 5.48 29.66 0.16 -2.25 16 18 C -0.10 -3.10 4.32 30.73 0.13 -2.96 16 19 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 20 H 0.01 0.36 7.20 -2.39 -0.02 0.34 16 21 H 0.05 1.96 5.14 -2.39 -0.01 1.95 16 22 H 0.41 11.95 9.10 -74.06 -0.67 11.28 16 23 H 0.07 2.35 8.10 -2.39 -0.02 2.33 16 24 H 0.07 3.04 6.43 -2.38 -0.02 3.02 16 25 H 0.12 3.14 8.06 -2.91 -0.02 3.11 16 26 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 27 H 0.10 2.07 8.14 -2.39 -0.02 2.06 16 28 H 0.07 2.03 6.93 -2.39 -0.02 2.02 16 29 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 30 H 0.06 2.10 7.91 -2.39 -0.02 2.08 16 Total: -1.00 -66.06 242.23 4.56 -61.50 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.42 Total: 16.77 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 2.13 Total: -22.59 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.30 Total: -57.70 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.18 Total: -43.25 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.26 kcal Total: -66.06 4.56 -61.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238649140.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.370 kcal (2) G-P(sol) polarization free energy of solvation -66.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds