Wall clock time and date at job start Mon Mar 30 2020 02:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00084 * 2 1 4 4 C 1.50702 * 109.46548 * 262.48740 * 3 2 1 5 5 H 1.07998 * 120.00369 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99604 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99918 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99877 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47191 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47367 * 120.00167 * 8 6 4 11 11 H 1.48496 * 109.47252 * 240.00364 * 8 6 4 12 12 C 1.34784 * 120.00002 * 179.71610 * 2 1 3 13 13 O 1.21606 * 119.99715 * 2.11470 * 12 2 1 14 14 C 1.47396 * 119.99947 * 182.11931 * 12 2 1 15 15 C 1.47100 * 128.56480 * 351.13576 * 14 12 2 16 16 N 1.30015 * 105.32900 * 179.89830 * 15 14 12 17 17 O 1.20657 * 112.30096 * 0.39691 * 16 15 14 18 18 C 1.33494 * 113.15837 * 359.73252 * 17 16 15 19 19 H 1.09001 * 109.46713 * 95.03442 * 1 2 3 20 20 H 1.09002 * 109.47202 * 215.03300 * 1 2 3 21 21 H 1.08990 * 109.47113 * 335.03871 * 1 2 3 22 22 H 1.08996 * 109.47123 * 22.48811 * 3 2 1 23 23 H 1.09000 * 109.47216 * 142.49332 * 3 2 1 24 24 H 0.97003 * 119.99768 * 180.02562 * 7 6 4 25 25 H 1.07999 * 127.33998 * 0.02562 * 15 14 12 26 26 H 1.07997 * 126.83085 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.6095 1.6108 -1.4087 5 1 2.3512 0.9495 -2.2225 6 6 3.3154 2.7685 -1.6586 7 7 3.6295 3.5740 -0.6676 8 14 3.8255 3.1929 -3.4047 9 1 3.3532 2.1318 -4.3302 10 1 3.2229 4.4930 -3.7944 11 1 5.3054 3.2915 -3.4780 12 6 2.1389 -1.1672 0.0058 13 8 1.5314 -2.2202 -0.0279 14 6 3.6121 -1.1674 0.0530 15 6 4.5340 -0.0288 -0.0794 16 7 5.7256 -0.5365 0.0332 17 8 5.7006 -1.7318 0.1959 18 6 4.4632 -2.2318 0.2253 19 1 -0.3633 -0.0902 -1.0237 20 1 -0.3634 -0.8415 0.5899 21 1 -0.3633 0.9316 0.4336 22 1 1.5569 2.0581 0.3931 23 1 3.0852 1.1758 0.6257 24 1 4.1258 4.3887 -0.8435 25 1 4.2760 1.0083 -0.2347 26 1 4.1863 -3.2671 0.3586 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259583697.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:36 Heat of formation + Delta-G solvation = 22.180598 kcal Electronic energy + Delta-G solvation = -13957.353344 eV Core-core repulsion = 11425.647531 eV Total energy + Delta-G solvation = -2531.705813 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.79875 -40.62255 -37.02965 -34.80050 -34.37072 -32.77960 -29.89398 -28.16003 -25.48928 -24.46388 -23.26265 -20.57910 -18.95922 -18.63247 -18.40508 -18.05856 -17.03676 -16.46339 -16.11200 -15.34722 -14.56244 -14.29541 -14.24116 -13.79319 -13.26802 -12.91124 -12.84618 -12.56947 -12.35850 -12.05291 -11.75167 -11.19167 -11.11992 -10.67561 -10.62371 -9.55032 -8.29573 -6.43176 0.22647 0.97635 1.36199 1.41335 1.49815 2.07871 2.23288 2.32947 2.44899 3.00709 3.50338 3.67047 3.93872 4.14350 4.53251 4.65481 4.75568 4.81343 4.90416 5.11075 5.23517 5.58159 5.73306 5.94658 6.39245 6.70477 7.14726 7.28798 7.38509 8.74391 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.026014 B = 0.014130 C = 0.010416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.075203 B = 1981.169005 C = 2687.629031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.597 5.597 3 C 0.229 3.771 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.030 3.970 7 N -0.910 5.910 8 Si 0.946 3.054 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.591 3.409 13 O -0.587 6.587 14 C -0.281 4.281 15 C 0.019 3.981 16 N -0.396 5.396 17 O 0.094 5.906 18 C 0.033 3.967 19 H 0.051 0.949 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.035 0.965 23 H 0.041 0.959 24 H 0.272 0.728 25 H 0.226 0.774 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -6.514 1.759 6.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.326 5.326 3 C 0.109 3.891 4 C -0.583 4.583 5 H 0.069 0.931 6 C -0.172 4.172 7 N -0.548 5.548 8 Si 0.772 3.228 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.205 1.205 12 C 0.381 3.619 13 O -0.471 6.471 14 C -0.288 4.288 15 C -0.162 4.162 16 N -0.104 5.104 17 O 0.037 5.963 18 C -0.050 4.050 19 H 0.070 0.930 20 H 0.092 0.908 21 H 0.105 0.895 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.241 0.759 26 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 0.423 -6.343 1.770 6.599 hybrid contribution -0.667 0.654 -0.975 1.350 sum -0.245 -5.689 0.796 5.749 Atomic orbital electron populations 1.21682 0.78215 1.03251 1.01913 1.47976 1.07960 1.06886 1.69770 1.19765 0.92739 0.80038 0.96581 1.21587 1.36155 1.06715 0.93802 0.93084 1.25527 0.95496 0.95600 1.00566 1.69975 1.39177 1.13134 1.32511 0.85663 0.78128 0.78397 0.80617 1.19832 1.19783 1.20499 1.17016 0.85332 0.83460 0.76112 1.90673 1.70062 1.31655 1.54721 1.22441 0.95624 0.94423 1.16348 1.28214 0.86271 1.04128 0.97552 1.73653 1.23820 0.91988 1.20898 1.84506 1.29390 1.16518 1.65886 1.26943 0.81827 1.01402 0.94820 0.93005 0.90829 0.89534 0.94676 0.94144 0.91841 0.75852 0.71405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.13 10.41 127.77 1.33 4.46 15 2 N -0.60 -24.97 2.88 -855.08 -2.46 -27.43 15 3 C 0.23 10.60 4.74 85.63 0.41 11.01 15 4 C -0.54 -27.28 7.23 25.60 0.19 -27.09 15 5 H 0.05 2.67 7.81 -2.91 -0.02 2.65 15 6 C 0.03 1.51 4.79 84.66 0.41 1.92 15 7 N -0.91 -47.57 13.24 21.45 0.28 -47.29 15 8 Si 0.95 41.14 29.54 68.60 2.03 43.17 15 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 12 C 0.59 24.95 7.60 86.65 0.66 25.60 15 13 O -0.59 -25.53 16.67 -4.05 -0.07 -25.60 15 14 C -0.28 -11.05 6.19 -18.75 -0.12 -11.16 15 15 C 0.02 0.81 9.62 87.29 0.84 1.65 15 16 N -0.40 -15.91 12.01 -54.20 -0.65 -16.57 15 17 O 0.09 3.10 11.06 76.98 0.85 3.95 15 18 C 0.03 0.98 12.21 67.61 0.83 1.80 15 19 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 20 H 0.07 2.34 7.60 -2.39 -0.02 2.32 15 21 H 0.09 2.61 7.78 -2.39 -0.02 2.59 15 22 H 0.04 1.67 7.77 -2.39 -0.02 1.65 15 23 H 0.04 1.96 4.71 -2.39 -0.01 1.95 15 24 H 0.27 13.54 8.31 -92.71 -0.77 12.77 15 25 H 0.23 10.93 3.47 -2.91 -0.01 10.92 15 26 H 0.27 5.15 8.06 -2.91 -0.02 5.13 15 Total: -1.00 -59.00 233.15 5.72 -53.27 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.21 Total: 8.31 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 4.53 Total: 8.19 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -2.83 Total: -91.29 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.78 Total: -21.65 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -59.00 5.72 -53.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259583697.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.454 kcal (2) G-P(sol) polarization free energy of solvation -58.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds