Wall clock time and date at job start Mon Mar 30 2020 02:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47389 * 2 1 4 4 C 1.39238 * 120.89322 * 90.00185 * 3 2 1 5 5 O 1.35534 * 120.40795 * 359.95987 * 4 3 2 6 6 N 1.32789 * 119.18470 * 180.23130 * 4 3 2 7 7 C 1.32547 * 121.14694 * 359.48848 * 6 4 3 8 8 O 1.35448 * 119.01420 * 180.26934 * 7 6 4 9 9 N 1.31890 * 121.98110 * 0.52760 * 7 6 4 10 10 C 1.34165 * 120.67542 * 359.73905 * 9 7 6 11 11 C 1.41585 * 120.60110 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00411 * 180.02562 * 11 10 9 13 13 C 1.40078 * 119.99892 * 0.02562 * 11 10 9 14 14 N 1.30693 * 119.99817 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99982 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47185 * 60.00149 * 15 13 11 17 17 H 1.48500 * 109.46746 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47190 * 299.99619 * 15 13 11 19 19 H 1.09003 * 109.47500 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.46798 * 299.99676 * 1 2 3 21 21 H 1.09004 * 109.47654 * 59.99433 * 1 2 3 22 22 H 1.09007 * 109.46798 * 240.00324 * 2 1 3 23 23 H 1.08997 * 109.47361 * 120.00434 * 2 1 3 24 24 H 0.96700 * 114.00259 * 89.99838 * 5 4 3 25 25 H 0.96696 * 114.00215 * 270.25520 * 8 7 6 26 26 H 0.97001 * 119.99618 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2707 2.0947 1.1948 5 8 2.0530 1.4814 2.3837 6 7 2.7088 3.3476 1.1553 7 6 2.9311 3.9600 0.0009 8 8 3.3831 5.2369 0.0110 9 7 2.7207 3.3652 -1.1573 10 6 2.2734 2.1013 -1.2064 11 6 2.0476 1.4645 -2.4506 12 1 1.6870 0.4469 -2.4788 13 6 2.2919 2.1544 -3.6450 14 7 2.7288 3.3856 -3.6108 15 14 1.9947 1.3140 -5.2866 16 1 0.5676 0.9159 -5.3877 17 1 2.3271 2.2510 -6.3896 18 1 2.8537 0.1069 -5.3874 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 2.8225 1.0083 2.7290 25 1 2.6816 5.9024 0.0139 26 1 2.8976 3.8634 -4.4379 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259622578.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:57 Heat of formation + Delta-G solvation = -46.043986 kcal Electronic energy + Delta-G solvation = -13856.913279 eV Core-core repulsion = 11322.249026 eV Total energy + Delta-G solvation = -2534.664253 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.48749 -37.02760 -35.81556 -33.79825 -33.07726 -31.01603 -28.29507 -26.39224 -23.21706 -22.08219 -20.48234 -18.80143 -17.45525 -16.98806 -15.96689 -15.14293 -14.32962 -14.13577 -13.83051 -13.25676 -12.85978 -12.18675 -11.67426 -11.52323 -11.30907 -11.25334 -11.07737 -10.96621 -10.47224 -10.34980 -10.10290 -9.77385 -9.02921 -8.65110 -7.75814 -7.55279 -6.60042 -4.91668 2.35253 2.64160 2.97954 2.99575 3.08173 3.77831 4.34800 4.47064 5.03883 5.57582 5.88183 5.90606 6.22322 6.30747 6.40066 6.56356 6.64534 6.77486 6.92503 6.97463 7.16325 7.31950 7.88240 8.14914 8.27332 8.51059 8.72654 8.92551 9.91556 10.07154 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.013769 C = 0.009654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.406564 B = 2033.004122 C = 2899.786079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.041 4.041 3 C -0.302 4.302 4 C 0.353 3.647 5 O -0.490 6.490 6 N -0.651 5.651 7 C 0.494 3.506 8 O -0.475 6.475 9 N -0.520 5.520 10 C 0.290 3.710 11 C -0.407 4.407 12 H 0.097 0.903 13 C 0.065 3.935 14 N -0.698 5.698 15 Si 0.913 3.087 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.262 1.262 19 H 0.041 0.959 20 H 0.046 0.954 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.048 0.952 24 H 0.384 0.616 25 H 0.391 0.609 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 -3.968 0.571 4.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 C -0.312 4.312 4 C 0.174 3.826 5 O -0.295 6.295 6 N -0.395 5.395 7 C 0.187 3.813 8 O -0.276 6.276 9 N -0.251 5.251 10 C 0.163 3.837 11 C -0.440 4.440 12 H 0.115 0.885 13 C -0.163 4.163 14 N -0.319 5.319 15 Si 0.736 3.264 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.186 1.186 19 H 0.060 0.940 20 H 0.065 0.935 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.239 0.761 25 H 0.246 0.754 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.545 -2.839 0.417 3.260 hybrid contribution -0.318 -0.866 -0.484 1.042 sum -1.864 -3.706 -0.066 4.149 Atomic orbital electron populations 1.21688 0.96465 0.99780 1.01745 1.19835 0.94812 0.92776 1.00556 1.21256 1.17427 0.99074 0.93466 1.18526 0.93091 0.87040 0.83902 1.84676 1.39097 1.69300 1.36404 1.66892 1.27391 1.12588 1.32643 1.20065 0.90729 0.86568 0.83970 1.84607 1.34954 1.12296 1.95734 1.68960 1.19830 1.11568 1.24763 1.18308 0.87363 0.86304 0.91728 1.19734 1.35811 0.99858 0.88598 0.88544 1.26205 0.93669 0.94820 1.01651 1.70093 1.23514 1.08731 1.29563 0.86282 0.80163 0.80040 0.79894 1.18602 1.19967 1.18611 0.93995 0.93481 0.92577 0.91614 0.93353 0.76102 0.75424 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.89 37.16 0.37 -2.14 15 2 C -0.04 -0.80 5.42 -27.89 -0.15 -0.96 15 3 C -0.30 -7.17 5.25 -103.37 -0.54 -7.72 15 4 C 0.35 8.44 7.80 -16.77 -0.13 8.31 15 5 O -0.49 -9.80 12.75 -18.30 -0.23 -10.04 15 6 N -0.65 -16.76 10.47 -14.86 -0.16 -16.92 15 7 C 0.49 12.98 8.70 -91.42 -0.80 12.19 15 8 O -0.48 -10.97 13.64 -18.03 -0.25 -11.22 15 9 N -0.52 -14.42 8.06 -12.72 -0.10 -14.53 15 10 C 0.29 7.68 6.58 -84.68 -0.56 7.13 15 11 C -0.41 -10.13 8.73 -37.62 -0.33 -10.46 15 12 H 0.10 2.19 6.15 -52.49 -0.32 1.87 15 13 C 0.06 1.55 5.50 -17.35 -0.10 1.46 15 14 N -0.70 -17.83 11.52 55.55 0.64 -17.19 15 15 Si 0.91 17.36 29.56 -169.99 -5.02 12.34 15 16 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 17 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 18 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 19 H 0.04 0.63 8.14 -51.93 -0.42 0.20 15 20 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 21 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 22 H 0.07 1.26 6.45 -51.93 -0.34 0.92 15 23 H 0.05 0.85 7.63 -51.93 -0.40 0.45 15 24 H 0.38 5.70 9.06 45.56 0.41 6.11 15 25 H 0.39 6.90 9.06 45.56 0.41 7.31 15 26 H 0.28 6.44 8.29 -40.82 -0.34 6.10 15 LS Contribution 236.26 15.07 3.56 3.56 Total: -1.00 -31.40 236.26 -4.43 -35.82 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -0.63 Total: 10.36 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -2.23 Total: 7.81 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.38 Total: -48.64 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.48 Total: -21.25 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.02 Total: 12.34 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.40 -4.43 -35.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259622578.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.223 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds